Silkworm BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002028-TA|BGIBMGA002028-PA|undefined
         (226 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0302 + 14102477-14102963,14103011-14103057,14103432-14104073     30   1.8  
10_08_0655 - 19621717-19622594,19623186-19623227,19624323-196244...    29   3.1  
07_01_1116 + 10308029-10308111,10308575-10308737,10308996-103090...    28   7.1  
06_01_0664 + 4850445-4850879,4853155-4854186                           28   7.1  
03_06_0225 - 32487592-32487710,32487860-32488325,32489124-324892...    28   7.1  
12_02_0990 + 25073910-25074734                                         27   9.4  

>04_03_0302 + 14102477-14102963,14103011-14103057,14103432-14104073
          Length = 391

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 28/109 (25%), Positives = 40/109 (36%), Gaps = 3/109 (2%)

Query: 80  RQNRVADDRDMRKQCSEPAVSTPPLPVLQKHESYPQYATKEREVGSLLIRAVTV--IDRQ 137
           R N V     M+    +P  STPPLP+L      PQ A   R      IR + V  +D  
Sbjct: 250 RLNNVFHVSLMKPFHGDPPYSTPPLPLLDHGRVVPQPAAIVRAQVCRGIREILVQWVDLS 309

Query: 138 XXXXXXXXXXXXXXXXXCVTTQRARHTPAVRSGPPLSCNFCWNTVDECG 186
                            C+    +R +   R G  +SC   +  +D+ G
Sbjct: 310 AEEASWVCQYNGLNFAECIHHFSSRTSCFTRRG-EMSCGGTFRIIDDLG 357


>10_08_0655 -
           19621717-19622594,19623186-19623227,19624323-19624479,
           19625333-19625405,19625483-19625595
          Length = 420

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 185 CGRILRRKTQYHCPECRTNLCIVPCF 210
           C    ++  QY CP C    C +PC+
Sbjct: 36  CRVCQKQFAQYTCPRCNARYCSLPCY 61


>07_01_1116 +
           10308029-10308111,10308575-10308737,10308996-10309062,
           10309120-10309375,10309658-10309781,10310039-10310077
          Length = 243

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 175 CNFCWNTVDECGRILRRKTQYHCPECRTNLCIVPCFHEYHDNPDAEP 221
           CN      DECG  +   T+   P C   +CI  C+ +++   ++ P
Sbjct: 153 CNKDVEREDECGICMETCTKMVLPNCSHAMCI-KCYRDWYRRSESCP 198


>06_01_0664 + 4850445-4850879,4853155-4854186
          Length = 488

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 174 SCNFCWNTVDECGRILRRKTQYHCPECR 201
           +C+ C+  +D CG +L     Y C  CR
Sbjct: 94  TCSKCYCDIDNCGLLLAGYIVYGCLPCR 121


>03_06_0225 -
           32487592-32487710,32487860-32488325,32489124-32489237,
           32489375-32489602,32489773-32490009,32490490-32490594
          Length = 422

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 76  KHFKRQNRVADDRDMRKQCSEPAVSTPPLPVLQKHE 111
           + F  +N  ++       CSEPA S+P +PV Q  E
Sbjct: 60  EEFPDENGPSEGDSNALSCSEPAFSSPNVPVPQTEE 95


>12_02_0990 + 25073910-25074734
          Length = 274

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 3/31 (9%)

Query: 87  DRDMRKQCSEPAVSTPPLPVLQKHESYPQYA 117
           D D+ +QC+ P +S PP P+  +H  YP+ A
Sbjct: 47  DHDLHRQCALP-LSPPPPPL--RHPFYPRCA 74


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.136    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,641,735
Number of Sequences: 37544
Number of extensions: 240739
Number of successful extensions: 460
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 457
Number of HSP's gapped (non-prelim): 6
length of query: 226
length of database: 14,793,348
effective HSP length: 80
effective length of query: 146
effective length of database: 11,789,828
effective search space: 1721314888
effective search space used: 1721314888
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)