Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002028-TA|BGIBMGA002028-PA|undefined
         (226 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26146| Best HMM Match : Cgr1 (HMM E-Value=5.2)                      33   0.19 
SB_20620| Best HMM Match : zf-HIT (HMM E-Value=8.5e-10)                31   1.0  
SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_45024| Best HMM Match : C1_4 (HMM E-Value=1.8)                      29   2.4  
SB_37669| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_20435| Best HMM Match : C1_4 (HMM E-Value=1.8)                      29   2.4  
SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)                      29   4.1  
SB_55441| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_53762| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_28756| Best HMM Match : C1_4 (HMM E-Value=0.095)                    28   5.5  
SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_12727| Best HMM Match : zf-CHY (HMM E-Value=3.7e-34)                27   9.6  
SB_9116| Best HMM Match : Methyltransf_4 (HMM E-Value=0)               27   9.6  
SB_3031| Best HMM Match : NblA (HMM E-Value=8.4)                       27   9.6  
SB_43760| Best HMM Match : C1_4 (HMM E-Value=1.2)                      27   9.6  
SB_43428| Best HMM Match : Glyco_hydro_47 (HMM E-Value=0)              27   9.6  
SB_29611| Best HMM Match : DED (HMM E-Value=6.5)                       27   9.6  
SB_28909| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_21851| Best HMM Match : zf-HIT (HMM E-Value=5)                      27   9.6  
SB_5835| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.6  

>SB_26146| Best HMM Match : Cgr1 (HMM E-Value=5.2)
          Length = 164

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 191 RKTQYHCPECRTNLCIVPCFHEYH 214
           +KTQ  C +C   LC+  CF E+H
Sbjct: 133 KKTQNRCRKCDVQLCVGDCFREWH 156


>SB_20620| Best HMM Match : zf-HIT (HMM E-Value=8.5e-10)
          Length = 567

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 177 FCWNTVDECGRILRRKTQYHCPECRTNLCIVPCF 210
           F  N+ D C    ++ ++Y CP C    C + C+
Sbjct: 17  FISNSADTCFFCKKQFSKYTCPRCNVRYCSISCY 50


>SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3212

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 42   ARAGYTKFVYRG--HYLGHNFEKSIKVDPGLKLRRSKHFKRQNRVADDRDMRKQCSEPAV 99
            +  G  K VY     +L H  + +   D G K+ R++H K    +  D+ +  QC E A+
Sbjct: 1802 SNGGDRKAVYNAMKEFLQHTDDNAADADFGDKIPRNQHLKPTGELPCDKSLPVQCVEMAL 1861


>SB_45024| Best HMM Match : C1_4 (HMM E-Value=1.8)
          Length = 212

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)

Query: 191 RKTQYHCPECRTNLCIVPCFHEYH 214
           ++T+  C +C  +LC+  CF E+H
Sbjct: 181 KETRNGCRKCDVHLCVGDCFREWH 204


>SB_37669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)

Query: 191 RKTQYHCPECRTNLCIVPCFHEYH 214
           ++T+  C +C  +LC+  CF E+H
Sbjct: 248 KETRNGCRKCDVHLCVGDCFREWH 271


>SB_20435| Best HMM Match : C1_4 (HMM E-Value=1.8)
          Length = 88

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)

Query: 191 RKTQYHCPECRTNLCIVPCFHEYH 214
           ++T+  C +C  +LC+  CF E+H
Sbjct: 57  KETRNGCRKCDVHLCVGDCFREWH 80


>SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)
          Length = 2276

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 192  KTQYHCPECRTNLCIVPCFHE 212
            +T+YHC EC      VPC+ E
Sbjct: 1444 ETRYHCNECEDYDLCVPCYDE 1464


>SB_55441| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 694

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 6/51 (11%)

Query: 156 VTTQRARHTPAVRSGPPLSCNFC-WN--TVDECGRILRRKT---QYHCPEC 200
           V++ RARH  + ++  P SC+ C W+  T  +  R L+  T    Y C EC
Sbjct: 332 VSSNRARHMRSHKNIKPYSCSQCEWSFTTSSDLKRHLKTHTGEKPYRCEEC 382


>SB_53762| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1010

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 9/47 (19%)

Query: 175 CNFCWNTVDECGRILRRKTQYHCPECRTNLCIVPCF----HEYHDNP 217
           CN C  T  E    L+ +  YHC  C  +LC   CF    H  H +P
Sbjct: 99  CNACLKTSQE----LQDRFSYHCSLCEFDLC-TSCFNPQRHLVHHHP 140


>SB_28756| Best HMM Match : C1_4 (HMM E-Value=0.095)
          Length = 201

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)

Query: 191 RKTQYHCPECRTNLCIVPCFHEYH 214
           ++T+  C +C  +LC+  CF E+H
Sbjct: 170 KETRNGCRKCDVHLCVGDCFCEWH 193


>SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1325

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 88  RDMRKQCSEPAVSTPPLPVLQKHE 111
           RD   QCS P  + PP  +L+ H+
Sbjct: 714 RDQHAQCSNPMSACPPFSLLRPHK 737


>SB_12727| Best HMM Match : zf-CHY (HMM E-Value=3.7e-34)
          Length = 168

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 4/26 (15%)

Query: 183 DECG--RILRRKTQYHCPECRTNLCI 206
           D CG  RI  RK  YHCP C  ++C+
Sbjct: 91  DACGICRIGGRKNFYHCPRC--DICL 114


>SB_9116| Best HMM Match : Methyltransf_4 (HMM E-Value=0)
          Length = 301

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 41  PARAGYTKFVYRGHYLGHN-FEKSIKVDPGLKLRRSKH 77
           PA    TKF  RGH LGH  ++   + +   +LR+  H
Sbjct: 211 PASRPVTKFEQRGHRLGHGVWDLMFERNRSRRLRKKMH 248


>SB_3031| Best HMM Match : NblA (HMM E-Value=8.4)
          Length = 256

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 188 ILRRKTQYHCPECRTNLCIVPCFHEYHDNPD 218
           ++ R   +HCP     LC V C     D+ D
Sbjct: 200 LMLRSVSFHCPFSLVRLCTVWCLDSLDDSSD 230


>SB_43760| Best HMM Match : C1_4 (HMM E-Value=1.2)
          Length = 121

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 192 KTQYHCPECRTNLCIVPCFHEYH 214
           +T+  C +C  +LC+  CF E+H
Sbjct: 91  ETRNGCRKCDVHLCVGDCFLEWH 113


>SB_43428| Best HMM Match : Glyco_hydro_47 (HMM E-Value=0)
          Length = 758

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 4/26 (15%)

Query: 183 DECG--RILRRKTQYHCPECRTNLCI 206
           D CG  RI  RK  YHCP C  ++C+
Sbjct: 91  DACGICRIGGRKNFYHCPRC--DICL 114


>SB_29611| Best HMM Match : DED (HMM E-Value=6.5)
          Length = 486

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 188 ILRRKTQYHCPECRTNLCIVPCFHEYHDNPD 218
           ++ R   +HCP     LC V C     D+ D
Sbjct: 188 LMLRSVSFHCPFSLVRLCTVWCLDSLDDSSD 218


>SB_28909| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 786

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/54 (27%), Positives = 22/54 (40%)

Query: 156 VTTQRARHTPAVRSGPPLSCNFCWNTVDECGRILRRKTQYHCPECRTNLCIVPC 209
           V    +RHT A+ +        C +T  +C R+ R      CP    +LC   C
Sbjct: 176 VALATSRHTVALGTSRHTVALVCRDTYSDCARLARSMGLQMCPMYGYSLCKKYC 229


>SB_21851| Best HMM Match : zf-HIT (HMM E-Value=5)
          Length = 106

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 191 RKTQYHCPECRTNLCIVPCFHEYH 214
           ++T   C +C  +LC+  CF E+H
Sbjct: 80  KETCNACRKCDVHLCVGDCFPEFH 103


>SB_5835| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 875

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/39 (25%), Positives = 20/39 (51%)

Query: 162 RHTPAVRSGPPLSCNFCWNTVDECGRILRRKTQYHCPEC 200
           R +P+++  PP+ C   +N ++ C  +LR     +   C
Sbjct: 150 RGSPSIQRIPPIICAAKFNAIESCRVLLRAGADVNITNC 188


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.136    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,693,216
Number of Sequences: 59808
Number of extensions: 274067
Number of successful extensions: 629
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 609
Number of HSP's gapped (non-prelim): 25
length of query: 226
length of database: 16,821,457
effective HSP length: 80
effective length of query: 146
effective length of database: 12,036,817
effective search space: 1757375282
effective search space used: 1757375282
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)