GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002028-TA|BGIBMGA002028-PA|undefined
         (226 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual          28   1.3  
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss...    26   3.9  
SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|c...    25   6.9  

>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 180 NTVDECGRILRRKTQYHCPECRTNLCIVPCFHEY 213
           N +  C    +  ++Y CP C +  C + C  E+
Sbjct: 4   NRLGICSTCQKNASKYRCPRCDSRFCCLECNLEH 37


>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
           Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 6/14 (42%), Positives = 10/14 (71%)

Query: 195 YHCPECRTNLCIVP 208
           +HCP C+  +C +P
Sbjct: 309 FHCPRCKAKVCTLP 322


>SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 154

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 8/26 (30%), Positives = 13/26 (50%)

Query: 185 CGRILRRKTQYHCPECRTNLCIVPCF 210
           C      + +Y CP+C    C +PC+
Sbjct: 4   CSICNESEIKYKCPKCSFPYCSLPCW 29


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.136    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 978,186
Number of Sequences: 5004
Number of extensions: 34065
Number of successful extensions: 72
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67
Number of HSP's gapped (non-prelim): 5
length of query: 226
length of database: 2,362,478
effective HSP length: 70
effective length of query: 156
effective length of database: 2,012,198
effective search space: 313902888
effective search space used: 313902888
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)