GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002028-TA|BGIBMGA002028-PA|undefined
         (226 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110490-8|CAB54444.2|  602|Caenorhabditis elegans Hypothetical ...    31   0.68 
AF025379-1|AAC14017.1|  602|Caenorhabditis elegans acetylcholine...    31   0.68 
U39851-8|AAF99879.1|  937|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z81083-4|CAB03102.1|  645|Caenorhabditis elegans Hypothetical pr...    27   8.3  
U41550-2|AAA83285.2|  301|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>AL110490-8|CAB54444.2|  602|Caenorhabditis elegans Hypothetical
           protein Y48B6A.7 protein.
          Length = 602

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 15/48 (31%), Positives = 27/48 (56%)

Query: 69  GLKLRRSKHFKRQNRVADDRDMRKQCSEPAVSTPPLPVLQKHESYPQY 116
           G+ L  SK++KR+ ++   + M+   S     TP L VL+  E +P++
Sbjct: 484 GIPLSYSKNYKRREQIFSRKIMQFWASFAKNGTPKLRVLKNSEHWPEF 531


>AF025379-1|AAC14017.1|  602|Caenorhabditis elegans
           acetylcholinesterase protein.
          Length = 602

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 15/48 (31%), Positives = 27/48 (56%)

Query: 69  GLKLRRSKHFKRQNRVADDRDMRKQCSEPAVSTPPLPVLQKHESYPQY 116
           G+ L  SK++KR+ ++   + M+   S     TP L VL+  E +P++
Sbjct: 484 GIPLSYSKNYKRREQIFSRKIMQFWASFAKNGTPKLRVLKNSEHWPEF 531


>U39851-8|AAF99879.1|  937|Caenorhabditis elegans Hypothetical
           protein C23G10.8 protein.
          Length = 937

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 97  PAVSTPPLPVLQKHESYPQYATKERE 122
           P++S PP+P    H +Y   A +ER+
Sbjct: 785 PSISAPPIPSRPGHSNYRMAAGRERD 810


>Z81083-4|CAB03102.1|  645|Caenorhabditis elegans Hypothetical
           protein F44F1.5 protein.
          Length = 645

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 97  PAVSTPPLPVLQKHESYPQYATKEREVGSLLIRAVTVI 134
           P V +P LP++ +   +P YA    E+G+ +I A   I
Sbjct: 75  PHVCSPCLPIIAEKGLFPDYAVWCEEIGNRVIFAFNSI 112


>U41550-2|AAA83285.2|  301|Caenorhabditis elegans Hypothetical
           protein R04A9.3 protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)

Query: 79  KRQNRVADDRDMRKQCSEPAVSTPP 103
           KRQN   +D    ++CS+P  S PP
Sbjct: 272 KRQNN--EDTSSERECSQPCTSAPP 294


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.136    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,560,559
Number of Sequences: 27539
Number of extensions: 204170
Number of successful extensions: 458
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 454
Number of HSP's gapped (non-prelim): 5
length of query: 226
length of database: 12,573,161
effective HSP length: 79
effective length of query: 147
effective length of database: 10,397,580
effective search space: 1528444260
effective search space used: 1528444260
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)