GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002027-TA|BGIBMGA002027-PA|IPR007889|Helix-turn-helix,
Psq, IPR011526|Helix-turn-helix, Psq-like
         (273 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    28   0.065
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   4.3  
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    22   5.7  

>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 28.3 bits (60), Expect = 0.065
 Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 8/115 (6%)

Query: 5   EEHRSEEAHNIDMMRESITLSSVPQ--QRRRDYHDDRTVENSQQTT---DQQNMNIDQVG 59
           + H+S  +H++D    S   SS+       + +H D+  EN+  T        ++++Q+ 
Sbjct: 246 QTHKSP-SHSVDNSNSSEKKSSIQHGDDAHKTHHLDKNPENTLGTMLSIHPSKLDVEQMN 304

Query: 60  M-DANTGGI-QQGAQWSMMEHTYPRYTNACIGSAGLQPEAGMYMNNVMEHHMEGE 112
           +  +N   + QQ  Q +M         N C   +       M  +N M HH++ E
Sbjct: 305 LLHSNDLNMHQQHHQQNMSHEELSAMVNRCHPLSLSSDHQAMLHHNPMSHHLKQE 359


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 3  MGEEHRSEEAHNIDMMRESITLSSVPQ--QRRRDYHD 37
          M E H  +   N  M  ESI +S V +  +   D+H+
Sbjct: 1  MDENHLEQTLENAGMPDESINISDVIEVIETDPDFHE 37


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
          protein 11 protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/17 (41%), Positives = 13/17 (76%)

Query: 42 ENSQQTTDQQNMNIDQV 58
          ENS+ TT   N+++D++
Sbjct: 20 ENSKYTTKYDNVDLDEI 36


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.131    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,558
Number of Sequences: 317
Number of extensions: 2073
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 3
length of query: 273
length of database: 114,650
effective HSP length: 56
effective length of query: 217
effective length of database: 96,898
effective search space: 21026866
effective search space used: 21026866
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)