GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002027-TA|BGIBMGA002027-PA|IPR007889|Helix-turn-helix,
Psq, IPR011526|Helix-turn-helix, Psq-like
         (273 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.54 
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce...    28   1.7  
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    26   5.1  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    26   6.7  
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    25   8.8  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    25   8.8  
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ...    25   8.8  

>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query: 235 PPHPVSVGFIDSRPLDFPLQAVPHNSPLNILGVNFNS 271
           PP P  VGF+ +    F LQA P NS ++    +F S
Sbjct: 687 PPSPSQVGFLKALHPSFDLQAAPPNSYVSFSDDDFIS 723


>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 10  EEAHNIDMMRESITLSSVP--QQRRRDYHDDRTVENSQQTTDQQNMNIDQVGMDANTGGI 67
           E A  +    +++++  +   Q   +DY D     N     +  ++N+D+  +DA    +
Sbjct: 111 ETARQLKSQSKNVSIEKIEKLQDEIQDYMDAAGELNEVLGQNMTDINVDEEELDAELEAL 170

Query: 68  QQGAQW 73
           QQ + W
Sbjct: 171 QQESSW 176


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/34 (35%), Positives = 21/34 (61%)

Query: 20  ESITLSSVPQQRRRDYHDDRTVENSQQTTDQQNM 53
           E   L+++ QQ R++Y   +  E S + TD++NM
Sbjct: 571 EMSKLNAIRQQFRKEYQTKKWDELSVKWTDEENM 604


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 74  SMMEHTYPRYTNACIGSAGLQPEAGMYMNNVMEHHMEGEMNEY 116
           S   HTY  Y  + +    LQ E   Y+NN    ++E  + E+
Sbjct: 91  SSNSHTYIMYGKSMVEIGHLQEEFMDYLNNSFLANLENSLAEF 133


>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 6   EHRSEEAHNIDMMRESITLSSVPQQRRRDYH 36
           EH S    NID   ES+  SS+P++     H
Sbjct: 293 EHLSASLGNIDAACESVITSSLPEELDSSTH 323


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/39 (30%), Positives = 23/39 (58%)

Query: 12  AHNIDMMRESITLSSVPQQRRRDYHDDRTVENSQQTTDQ 50
           +++  +++ S  L+S    RR    DD++  NSQQ ++Q
Sbjct: 474 SNSSSILQPSYNLNSHSSDRRNTNDDDQSSLNSQQLSNQ 512


>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 305

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/25 (44%), Positives = 13/25 (52%)

Query: 27  VPQQRRRDYHDDRTVENSQQTTDQQ 51
           +PQQ R  Y DDR + N   T   Q
Sbjct: 115 IPQQLRLGYPDDRALMNYHSTVTPQ 139


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.131    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,115,749
Number of Sequences: 5004
Number of extensions: 38914
Number of successful extensions: 90
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83
Number of HSP's gapped (non-prelim): 7
length of query: 273
length of database: 2,362,478
effective HSP length: 72
effective length of query: 201
effective length of database: 2,002,190
effective search space: 402440190
effective search space used: 402440190
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)