Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002027-TA|BGIBMGA002027-PA|IPR007889|Helix-turn-helix,
Psq, IPR011526|Helix-turn-helix, Psq-like
(273 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10447| Best HMM Match : Dor1 (HMM E-Value=3.3) 30 1.8
SB_21168| Best HMM Match : WD40 (HMM E-Value=6.3e-15) 29 3.1
SB_30003| Best HMM Match : DUF906 (HMM E-Value=0) 29 4.1
SB_58895| Best HMM Match : SRCR (HMM E-Value=0) 28 7.2
SB_54201| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_45794| Best HMM Match : zf-CCCH (HMM E-Value=3.1e-27) 28 7.2
SB_24326| Best HMM Match : DENN (HMM E-Value=0) 28 9.5
SB_21141| Best HMM Match : Collagen (HMM E-Value=0.01) 28 9.5
SB_38168| Best HMM Match : Lectin_C (HMM E-Value=7.9e-06) 28 9.5
>SB_10447| Best HMM Match : Dor1 (HMM E-Value=3.3)
Length = 466
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 2 VMGEEHRSEEAHNIDMMRESITLSSVPQQRRRDYHDDRTVENSQQTTDQQNM--NIDQVG 59
V+G +E+ R V Q R+ + DD T+++ QTT+ + N
Sbjct: 248 VLGANLNNEDTIQTQRKRSQTIDEIVSQAGRKSFSDDSTIDSKSQTTESDLLLNNYGNAW 307
Query: 60 MDANT 64
+D NT
Sbjct: 308 IDINT 312
>SB_21168| Best HMM Match : WD40 (HMM E-Value=6.3e-15)
Length = 476
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 84 TNACIGSAGLQPEAG-MYMNNVMEHHMEGEMNEYAQG 119
T+ C+ SAG + G Y+N M ++ G+M Y G
Sbjct: 191 TSTCLVSAGYDIDRGNSYLNGKMTSYLNGKMTSYLNG 227
>SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)
Length = 2276
Score = 29.1 bits (62), Expect = 4.1
Identities = 27/112 (24%), Positives = 40/112 (35%), Gaps = 8/112 (7%)
Query: 13 HNIDMMRESITLSSVPQ-QRRRDYHDDRTVENSQQTTDQQNMNIDQVGMDANTGGIQQGA 71
HN+ M + + +PQ + ++ QQ Q+M GM GIQQG
Sbjct: 1903 HNMGMPPQGMQQGMLPQGMPPQGMQQGLPPQSMQQGMAPQSMQQGMQGMQQGMQGIQQGM 1962
Query: 72 QWSMMEHTYPRYTNACIGSAGLQPEAGMYMNNVMEHHMEGEMNEYAQGLGVG 123
Q +P G+QP M M+ M+ QG+ G
Sbjct: 1963 QGMQQGMQHPM-------QQGMQPGMQMGMHQGMQQMQPNMQQGMQQGMQQG 2007
>SB_58895| Best HMM Match : SRCR (HMM E-Value=0)
Length = 1838
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 3 MGEEHRSEEAHNIDMMRESITLSSVPQQRRRDYHDDRTVENSQQTTDQ 50
M E +EEA N M E++T+ + + + H + +Q TTD+
Sbjct: 200 MKNEQMTEEATNQPMTGEAMTIQPMTGEAMTNQHMTKEAMKNQPTTDE 247
>SB_54201| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/63 (22%), Positives = 27/63 (42%)
Query: 13 HNIDMMRESITLSSVPQQRRRDYHDDRTVENSQQTTDQQNMNIDQVGMDANTGGIQQGAQ 72
H + RE + + +QRRR+ R E +++ D +M +V D ++
Sbjct: 157 HATEKNREKVMAEVLAKQRRREERARRVRERAKRIQDGDDMGNIEVDPDETYNADEEDEM 216
Query: 73 WSM 75
W +
Sbjct: 217 WDL 219
>SB_45794| Best HMM Match : zf-CCCH (HMM E-Value=3.1e-27)
Length = 527
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 233 LCPPHPVSVGFID----SRPLDFPLQAVPHNSP 261
L PP P S+ F D S P+D PL + NSP
Sbjct: 258 LTPPSPSSLQFYDESPLSSPIDSPLPVINPNSP 290
>SB_24326| Best HMM Match : DENN (HMM E-Value=0)
Length = 1281
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 230 MALLCPPHPVSVGFIDSRPLDFPLQAVPHNSPLNILGV 267
M LLCP S+ F FPL P + P+ +LGV
Sbjct: 224 MELLCPESYPSLTFAYPENTRFPLIDFPVHIPMELLGV 261
>SB_21141| Best HMM Match : Collagen (HMM E-Value=0.01)
Length = 738
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 153 NPQSEENFQRALEAVRFGGIGFCKAARMFGVNNRTLWLEYKKKGYPNNRPSI 204
N +S+ ++R + K R ++ R+ ++ ++ GYPNNRP +
Sbjct: 311 NVESQSGYRRGWREALLARVTKTKP-RNVNMSRRSDLMDQRRFGYPNNRPEV 361
>SB_38168| Best HMM Match : Lectin_C (HMM E-Value=7.9e-06)
Length = 583
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 7/49 (14%)
Query: 66 GIQQG-AQWSMMEHTYPRYTN--ACIGSAGLQPEAGMYMNNVMEHHMEG 111
G++ G W ++ +YPRYTN + G +G+ +Y+++ EH + G
Sbjct: 155 GLKGGNGNWKWIDDSYPRYTNWDSSSGHSGMY----VYLSSSSEHALYG 199
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.131 0.395
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,159,663
Number of Sequences: 59808
Number of extensions: 285298
Number of successful extensions: 627
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 615
Number of HSP's gapped (non-prelim): 18
length of query: 273
length of database: 16,821,457
effective HSP length: 81
effective length of query: 192
effective length of database: 11,977,009
effective search space: 2299585728
effective search space used: 2299585728
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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