GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002027-TA|BGIBMGA002027-PA|IPR007889|Helix-turn-helix,
Psq, IPR011526|Helix-turn-helix, Psq-like
         (273 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.              25   2.3  
AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    25   2.3  
AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    23   7.1  
AF513635-1|AAM53607.1|  212|Anopheles gambiae glutathione S-tran...    23   9.4  

>M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.
          Length = 613

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 16/79 (20%), Positives = 29/79 (36%)

Query: 5   EEHRSEEAHNIDMMRESITLSSVPQQRRRDYHDDRTVENSQQTTDQQNMNIDQVGMDANT 64
           ++ + ++ H     ++   +    QQ +R     +     QQ  +QQ +    V    NT
Sbjct: 261 QQQQQQQQHQQREQQQQQRVQQQNQQHQRQQQQQQQQRQQQQQQEQQELWTTVVRRRQNT 320

Query: 65  GGIQQGAQWSMMEHTYPRY 83
              QQ  Q    +    RY
Sbjct: 321 QQQQQSNQPQQQQQQTGRY 339


>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1209

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 24  LSSVPQQRRRDYHDDRTVENSQQTTDQQNMN--IDQVGMDANTGGIQQGAQWSMMEHTYP 81
           LSSV  Q+ +D+ D   V   +QT  ++N     DQV +DA   G Q   +   ++  Y 
Sbjct: 547 LSSVITQKVKDHCDTNNVMTEEQTGRRKNTQGCKDQVIIDAVIVG-QAAKKQRNLDMAYI 605

Query: 82  RYTNA 86
            Y  A
Sbjct: 606 DYKKA 610


>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
           protein.
          Length = 3325

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 11/38 (28%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 29  QQRRRDYHDDRTVENSQQTTDQQNMNIDQVGMDANTGG 66
           ++RR    D RT+  ++    + +  ++++G+DANT G
Sbjct: 502 KKRRVKMADLRTLIETR-ILSKSDRGLEKIGLDANTNG 538


>AF513635-1|AAM53607.1|  212|Anopheles gambiae glutathione
           S-transferase D4 protein.
          Length = 212

 Score = 23.0 bits (47), Expect = 9.4
 Identities = 10/19 (52%), Positives = 11/19 (57%)

Query: 183 VNNRTLWLEYKKKGYPNNR 201
           VN  TLWL Y+   YP  R
Sbjct: 161 VNALTLWLGYELAPYPRIR 179


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.317    0.131    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 253,809
Number of Sequences: 2123
Number of extensions: 9155
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 5
length of query: 273
length of database: 516,269
effective HSP length: 63
effective length of query: 210
effective length of database: 382,520
effective search space: 80329200
effective search space used: 80329200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)