GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002027-TA|BGIBMGA002027-PA|IPR007889|Helix-turn-helix,
Psq, IPR011526|Helix-turn-helix, Psq-like
         (273 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034393-17|CAA22315.1|  503|Caenorhabditis elegans Hypothetical...    29   4.7  

>AL034393-17|CAA22315.1|  503|Caenorhabditis elegans Hypothetical
           protein Y18D10A.23 protein.
          Length = 503

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 66  GIQQGAQWSMMEHTYPRYTNAC 87
           GIQ G  W MM+  +P+Y   C
Sbjct: 87  GIQLGENWEMMQIRWPKYRTHC 108


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.131    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,053,696
Number of Sequences: 27539
Number of extensions: 214829
Number of successful extensions: 533
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 532
Number of HSP's gapped (non-prelim): 1
length of query: 273
length of database: 12,573,161
effective HSP length: 80
effective length of query: 193
effective length of database: 10,370,041
effective search space: 2001417913
effective search space used: 2001417913
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)