GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002027-TA|BGIBMGA002027-PA|IPR007889|Helix-turn-helix,
Psq, IPR011526|Helix-turn-helix, Psq-like
         (273 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          35   9e-04
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             27   0.24 

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 34.7 bits (76), Expect = 9e-04
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 147 KRRRTTNPQSEENFQRALEAVRFGGIGFCKAARMFGVNNRTLWLEYKKKG 196
           K+   T   S+E+   AL+A+R G I   KA++ FG+ + TL+   +++G
Sbjct: 457 KKDGPTKSWSDESLNNALDALRTGTISANKASKAFGIPSSTLYKIARREG 506



 Score = 31.9 bits (69), Expect = 0.006
 Identities = 18/77 (23%), Positives = 29/77 (37%)

Query: 120 LGVGPSXXXXXXXXXXXXXXXXXXXXXKRRRTTNPQSEENFQRALEAVRFGGIGFCKAAR 179
           LG+ PS                          +   ++E+   ALEA+R   +   KA+ 
Sbjct: 376 LGLMPSGSSVHSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHDMSLTKASA 435

Query: 180 MFGVNNRTLWLEYKKKG 196
            FG+ + TLW    + G
Sbjct: 436 TFGIPSTTLWQRAHRLG 452



 Score = 30.3 bits (65), Expect = 0.019
 Identities = 16/46 (34%), Positives = 25/46 (54%)

Query: 156 SEENFQRALEAVRFGGIGFCKAARMFGVNNRTLWLEYKKKGYPNNR 201
           S  +  RALEA+R G     +A+  FG+   TL+   K++G   +R
Sbjct: 521 SPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSR 566



 Score = 29.5 bits (63), Expect = 0.034
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 149 RRTTNPQSEENFQRALEAVRFGGIGFCKAARMFGVNNRTLWLEYKKKGY 197
           R    P SE+    ALEAVR G +   +AA  + +   +L+  +K+  Y
Sbjct: 566 RSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKY 614


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 156 SEENFQRALEAVRFGGIGFCKAARMFGVNNRTL 188
           +EE  Q AL  ++ G +G  +AA ++G+   TL
Sbjct: 592 TEEELQAALRDIQSGKLGTRRAAVIYGIPRSTL 624



 Score = 24.6 bits (51), Expect = 0.96
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 28  PQQRRRDYHDDRTVENSQQTTDQQNMNIDQVGMDANTG 65
           PQQ+++     +  +    T D  N NI++   D+  G
Sbjct: 841 PQQQQQQQQQQQQQQRGPMTNDDFNPNIEEEASDSAQG 878


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.131    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,735
Number of Sequences: 429
Number of extensions: 2895
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 7
length of query: 273
length of database: 140,377
effective HSP length: 57
effective length of query: 216
effective length of database: 115,924
effective search space: 25039584
effective search space used: 25039584
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)