GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002027-TA|BGIBMGA002027-PA|IPR007889|Helix-turn-helix,
Psq, IPR011526|Helix-turn-helix, Psq-like
         (273 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61380.1 68418.m07701 ABI3-interacting protein 1 (AIP1) ident...    32   0.36 
At3g16560.1 68416.m02116 protein phosphatase 2C-related / PP2C-r...    30   1.9  
At4g36490.1 68417.m05181 SEC14 cytosolic factor, putative / phos...    28   7.7  
At2g38440.1 68415.m04721 expressed protein                             28   7.7  

>At5g61380.1 68418.m07701 ABI3-interacting protein 1 (AIP1)
           identical to pseudo-response regulator 1 GI:7576354 from
           [Arabidopsis thaliana]; timing of CAB expression 1
           protein (TOC1) GI:9247019; contains Pfam profile
           PF00072:  Response regulator receiver domain; identical
           to cDNA ABI3-interacting protein 1 (aip1 gene)
           GI:6996312
          Length = 618

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 6/113 (5%)

Query: 5   EEHRSEEAHNIDMMRESITL-SSVPQQRRRDYHDDRTVENSQQTTDQQNMNIDQVGMDAN 63
           + HRS          E++   +S P    R      ++E+  +   + NMNI QV M+ +
Sbjct: 368 QAHRSRGTEQYHSQGETLQNGASYPHSLERSRTLPTSMESHGRNYQEGNMNIPQVAMNRS 427

Query: 64  TGGIQQGAQWSMMEHTYPRYTNACIG-----SAGLQPEAGMYMNNVMEHHMEG 111
               Q         + YP Y +  +      SA + P+ G  + +   +H  G
Sbjct: 428 KDSSQVDGSGFSAPNAYPYYMHGVMNQVMMQSAAMMPQYGHQIPHCQPNHPNG 480


>At3g16560.1 68416.m02116 protein phosphatase 2C-related /
           PP2C-related contains protein phosphatase 2C domain
          Length = 493

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 24  LSSVPQQRRRDYHDDRTVENSQQTTDQQ 51
           L++VP  RRR YHDD T+      TDQ+
Sbjct: 458 LTNVPAGRRRRYHDDVTIMVITLGTDQR 485


>At4g36490.1 68417.m05181 SEC14 cytosolic factor, putative /
          phosphoglyceride transfer protein, putative similar to
          phosphatidylinositol transfer-like protein IV
          (GI:14486707) [Lotus japonicus]; contains Pfam PF00650
          : CRAL/TRIO domain; contains Pfam PF03765 : CRAL/TRIO,
          N-terminus; supporting cDNA gi|23463078|gb|BT000834.1|
          Length = 543

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/35 (28%), Positives = 20/35 (57%)

Query: 2  VMGEEHRSEEAHNIDMMRESITLSSVPQQRRRDYH 36
          ++ + H +EE   +D  R+S+ L  +  ++  DYH
Sbjct: 43 IIEDVHDAEELKAVDAFRQSLILDELLPEKHDDYH 77


>At2g38440.1 68415.m04721 expressed protein 
          Length = 1399

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/41 (26%), Positives = 21/41 (51%)

Query: 12   AHNIDMMRESITLSSVPQQRRRDYHDDRTVENSQQTTDQQN 52
            A N +++    +   +PQ +  D+ DD  V  SQ ++D  +
Sbjct: 1184 AQNHELVYSQASSLQLPQVKHEDFKDDADVHESQSSSDDHH 1224


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.131    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,763,533
Number of Sequences: 28952
Number of extensions: 200976
Number of successful extensions: 419
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 415
Number of HSP's gapped (non-prelim): 4
length of query: 273
length of database: 12,070,560
effective HSP length: 80
effective length of query: 193
effective length of database: 9,754,400
effective search space: 1882599200
effective search space used: 1882599200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)