GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002026-TA|BGIBMGA002026-PA|IPR013069|BTB/POZ,
IPR000210|BTB
         (173 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.         138   2e-35
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.     134   4e-34
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      40   1e-05
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    26   0.23 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     26   0.23 
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   2.2  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              21   8.7  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score =  138 bits (335), Expect = 2e-35
 Identities = 67/135 (49%), Positives = 92/135 (68%), Gaps = 1/135 (0%)

Query: 3   QQYSLRWNNHQPNFISMFTTLLNTQTLVDVTLAAEGKHLQAHKVVLSACSTYFQALFVDN 62
           Q Y LRWNN+Q N  S+F  LL T+  VDVTLA     L+AHKVVLSACS+YFQ L + N
Sbjct: 9   QHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSN 68

Query: 63  PSRHPIVIL-KDVTFADLRTMVDFMYYGEVNVTEEQLPQVLDTAKLLKIKGLTEMPDSTS 121
           P +HP +I+ +DV F DL+ +++F+Y GE++V++ +L  +L TA  LKIKGL E+P+S  
Sbjct: 69  PCKHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPESRD 128

Query: 122 LTRSQGTSADFQSPG 136
              S   S+  + PG
Sbjct: 129 GPPSVSLSSPPREPG 143


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score =  134 bits (324), Expect = 4e-34
 Identities = 57/119 (47%), Positives = 84/119 (70%)

Query: 2   SQQYSLRWNNHQPNFISMFTTLLNTQTLVDVTLAAEGKHLQAHKVVLSACSTYFQALFVD 61
           +Q + LRWNN+Q +  S F  L + +  VDVTLA +G+ L+AH+VVLSACS YF+ L   
Sbjct: 4   TQHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACDGRSLKAHRVVLSACSPYFRELLKS 63

Query: 62  NPSRHPIVILKDVTFADLRTMVDFMYYGEVNVTEEQLPQVLDTAKLLKIKGLTEMPDST 120
            P +HP+++L+DV F+DL  +V+F+Y+GEVNV +  L   L TA++L++ GLT+  D T
Sbjct: 64  TPCKHPVIVLQDVAFSDLHALVEFIYHGEVNVHQRSLSSFLKTAEVLRVSGLTQQADQT 122


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 39.9 bits (89), Expect = 1e-05
 Identities = 17/36 (47%), Positives = 23/36 (63%)

Query: 2  SQQYSLRWNNHQPNFISMFTTLLNTQTLVDVTLAAE 37
          +Q + LRWNN+Q +  S F  L + +  VDVTLA E
Sbjct: 4  TQHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACE 39


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 25.8 bits (54), Expect = 0.23
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 92  NVTEEQLPQVLDTAKLLKIKGLTEMPDSTSLT---RSQGTSADFQSPGESVDSQRHSASP 148
           N  E+Q+P+ ++T +LL    + E P S +L      +G SA    PG +  S+  +   
Sbjct: 28  NGREDQIPREMNTERLLPYVEIIEQPASKALRFRYECEGRSAG-SIPGVNSTSENKTFPT 86

Query: 149 ASSPSNKRKRFVLVN 163
                 K +  V+V+
Sbjct: 87  IKIVGYKGRALVVVS 101


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 25.8 bits (54), Expect = 0.23
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 92  NVTEEQLPQVLDTAKLLKIKGLTEMPDSTSLT---RSQGTSADFQSPGESVDSQRHSASP 148
           N  E+Q+P+ ++T +LL    + E P S +L      +G SA    PG +  S+  +   
Sbjct: 28  NGREDQIPREMNTERLLPYVEIIEQPASKALRFRYECEGRSAG-SIPGVNSTSENKTFPT 86

Query: 149 ASSPSNKRKRFVLVN 163
                 K +  V+V+
Sbjct: 87  IKIVGYKGRALVVVS 101


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 125 SQGTSADFQSPGESVDSQRHSASPASSPSNK 155
           S GT++   S   S +S R + SP+ S S++
Sbjct: 177 SLGTASSTSSTASSRNSDRSAGSPSVSESDE 207


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/22 (31%), Positives = 14/22 (63%)

Query: 82  MVDFMYYGEVNVTEEQLPQVLD 103
           ++D +Y G VNV +E +   ++
Sbjct: 43  IIDEVYNGNVNVEDENVQSYVE 64


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.128    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,844
Number of Sequences: 429
Number of extensions: 1500
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 173
length of database: 140,377
effective HSP length: 54
effective length of query: 119
effective length of database: 117,211
effective search space: 13948109
effective search space used: 13948109
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 41 (20.6 bits)