Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002025-TA|BGIBMGA002025-PA|undefined
         (165 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    26   0.22 
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              21   6.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.2  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    21   8.2  

>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 25.8 bits (54), Expect = 0.22
 Identities = 12/53 (22%), Positives = 23/53 (43%)

Query: 112 DSNQEIRSVIDIWGVKNYEKTTRRALNPESLKNMKSLYLFKELRAVNHNGGFW 164
           D    +R++   +G       T  A NP ++K +    +F  + + +  G FW
Sbjct: 52  DKEGRLRAINPEYGFFGVAPGTSSATNPNAMKTIFKNTIFTNVASTSDGGIFW 104


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)

Query: 10  KILVKLIFIISNVDARIFCEKNKM 33
           +I V++I   SNVD+   CEK+ M
Sbjct: 104 EIGVEMIDSCSNVDSSDKCEKSFM 127


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 4/42 (9%)

Query: 20  SNVDARIFCEKNKMPLEVGEWHKDYKQMDSAIVENSPVTINE 61
           S  D  + C     P+ V  W   YK ++ +     PV +NE
Sbjct: 226 SKADLPLLCPAQGFPVPVHRW---YKFIEGS-SRRQPVQLNE 263


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
          finger domain-Z2 isoform protein.
          Length = 71

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 5/18 (27%), Positives = 11/18 (61%)

Query: 25 RIFCEKNKMPLEVGEWHK 42
          R++C +N +   +  +HK
Sbjct: 43 RVYCSRNSLMTHIYTYHK 60


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,352
Number of Sequences: 429
Number of extensions: 1834
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 165
length of database: 140,377
effective HSP length: 53
effective length of query: 112
effective length of database: 117,640
effective search space: 13175680
effective search space used: 13175680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 41 (20.6 bits)