GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002025-TA|BGIBMGA002025-PA|undefined
         (165 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...    27   1.9  
SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|...    24   9.9  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    24   9.9  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    24   9.9  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    24   9.9  

>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 13/30 (43%), Positives = 15/30 (50%)

Query: 24  ARIFCEKNKMPLEVGEWHKDYKQMDSAIVE 53
           ARI  E    P    EW +D K M S I+E
Sbjct: 300 ARIAAEILNSPQLFAEWEQDLKTMSSRIIE 329


>SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 160

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 106 LIVLHADSNQEIRSVIDIWGVKN 128
           LI+    + Q  RS+I  WG KN
Sbjct: 117 LILKDVKATQNFRSIIHRWGFKN 139


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 92  SASIKNGGVGTSSVLIVLHADSNQEIRSVIDIWGVKNYEKTTRRALNPESLKNMKSL 148
           S  +KN      S L V   DS+ + RS++   G    E   RR L P S K + SL
Sbjct: 156 SKFVKNEDEAYDSDLYVEEEDSDVKGRSMVGRDGRYKSEDLKRRKLQPSS-KPLSSL 211


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 8/27 (29%), Positives = 16/27 (59%)

Query: 138 NPESLKNMKSLYLFKELRAVNHNGGFW 164
           NP  ++++K L+  K+   ++ N G W
Sbjct: 901 NPRYIQHVKRLHRIKDTEFIDFNDGKW 927


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 7/22 (31%), Positives = 16/22 (72%)

Query: 41   HKDYKQMDSAIVENSPVTINEG 62
            H+ Y ++D+ +++ + VT+ EG
Sbjct: 1297 HRLYTRLDNKLIDEAEVTLEEG 1318


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.135    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 742,171
Number of Sequences: 5004
Number of extensions: 29505
Number of successful extensions: 92
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 87
Number of HSP's gapped (non-prelim): 6
length of query: 165
length of database: 2,362,478
effective HSP length: 68
effective length of query: 97
effective length of database: 2,022,206
effective search space: 196153982
effective search space used: 196153982
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)