Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002025-TA|BGIBMGA002025-PA|undefined
(165 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0266 + 32746379-32746836,32747898-32748273,32748367-327486... 32 0.20
05_06_0058 + 25258532-25258685,25258767-25258823,25258923-252590... 31 0.61
08_02_1424 + 26982502-26983572,26984129-26984908,26988299-26990128 28 4.3
04_04_1630 - 34896021-34896143,34896329-34896403,34896500-348965... 28 4.3
01_06_1567 + 38293612-38293795,38294467-38294523,38294609-382946... 27 5.7
06_01_1193 + 10264360-10264504,10264763-10264910,10268350-102687... 27 7.5
05_06_0250 - 26682207-26683811 27 10.0
03_05_1157 + 30816143-30816359,30817005-30817120 27 10.0
02_01_0679 - 5048653-5051394 27 10.0
>03_06_0266 +
32746379-32746836,32747898-32748273,32748367-32748640,
32750605-32750789
Length = 430
Score = 32.3 bits (70), Expect = 0.20
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 11 ILVKLIFIISNVDARIFCEKNKMPLEVGEWHKDYKQMDSAIVENSPVTI-NEGQLYVYEN 69
I V + I +D R+ E + HK + Q D ++ E+SP T+ N G ++ Y+
Sbjct: 99 ISVFIALISDGIDVRVLFELKLLDQSGKAKHKGHSQFDRSL-ESSPYTLKNRGSMWGYKR 157
Query: 70 YF 71
+F
Sbjct: 158 FF 159
>05_06_0058 +
25258532-25258685,25258767-25258823,25258923-25259013,
25259074-25259282,25259421-25259548,25259651-25259788,
25261017-25261083,25261232-25261353
Length = 321
Score = 30.7 bits (66), Expect = 0.61
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 104 SVLIVLHADSNQEIRSVIDIWGV 126
SV+IV+HA QEI SV +IW +
Sbjct: 144 SVVIVIHAPQEQEITSVREIWNM 166
>08_02_1424 + 26982502-26983572,26984129-26984908,26988299-26990128
Length = 1226
Score = 27.9 bits (59), Expect = 4.3
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 48 DSAIVENSPVTINEGQLYVYENYFPGHTIKYIHVDNLAIRSCGASASIKNGGVGTSSVLI 107
DS V + V +G + E+ P H + + ++++ S + G +I
Sbjct: 386 DSKTVPSDGVIQEDGPKDLPESSLPPHLNR--DSNTVSVKELSRSTTQLIGRGKEKDDVI 443
Query: 108 VLHADSNQEIRSVIDIWGVKNYEKTT 133
L +D N IR VI +WG+ KTT
Sbjct: 444 KLLSDCNP-IRQVISVWGMGGIGKTT 468
>04_04_1630 -
34896021-34896143,34896329-34896403,34896500-34896556,
34897176-34897352,34897426-34897492,34898043-34898101,
34898188-34898241,34898455-34898604,34898709-34898918,
34898980-34899039,34899399-34899527,34899616-34899720,
34899935-34900024,34900630-34900695,34901047-34901115,
34901348-34901467,34901572-34901634,34901681-34901817,
34902070-34902160,34902298-34902463,34902700-34904172,
34905666-34905940,34906322-34906819,34906996-34907145,
34907840-34907911,34908006-34908266,34908478-34908558,
34908745-34908996,34909323-34909382,34909602-34909853,
34910385-34910549,34910589-34910849,34911267-34912307,
34913398-34913457,34914055-34914165,34914448-34914534,
34915227-34915300,34915397-34915490,34915644-34915689,
34916397-34916521
Length = 2501
Score = 27.9 bits (59), Expect = 4.3
Identities = 17/40 (42%), Positives = 20/40 (50%)
Query: 118 RSVIDIWGVKNYEKTTRRALNPESLKNMKSLYLFKELRAV 157
R V W N K T R PE KN+++L L KE AV
Sbjct: 908 RKVPSSWMKVNSTKKTIRYHTPEVSKNLENLLLAKEKLAV 947
>01_06_1567 +
38293612-38293795,38294467-38294523,38294609-38294699,
38294799-38294959,38295045-38295172,38295291-38295428,
38295717-38295809,38298219-38298324,38298393-38298517
Length = 360
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 104 SVLIVLHADSNQEIRSVIDIWGV 126
S IVLHA +EI SV ++W +
Sbjct: 138 STTIVLHAPQEREIDSVAEVWAL 160
>06_01_1193 +
10264360-10264504,10264763-10264910,10268350-10268748,
10268925-10271214
Length = 993
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 36 EVGEWHKDYKQMDSAIVENSPVTINEGQLYVYENYFPGH 74
+V EW K YKQ+ S + N + + + N+ P H
Sbjct: 390 QVLEWEKFYKQLPSELESNPSLQALRRMVTLGYNHLPSH 428
>05_06_0250 - 26682207-26683811
Length = 534
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 110 HADS-NQEIRSVIDIWGVKNYE 130
H+DS N+ I + ID WGVK+ E
Sbjct: 171 HSDSINRLIATAIDAWGVKDLE 192
>03_05_1157 + 30816143-30816359,30817005-30817120
Length = 110
Score = 26.6 bits (56), Expect = 10.0
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 83 NLAIRSCGASASIKNGGVGTSSVLIVLHADSNQ 115
NL+ S A+A I+N G G S LI+ H N+
Sbjct: 62 NLSTSSAYAAAGIENTGNGEKSPLIIPHDTLNK 94
>02_01_0679 - 5048653-5051394
Length = 913
Score = 26.6 bits (56), Expect = 10.0
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 112 DSNQEIRSVIDIWGVKNYEKTTRRALNPESLKNMKSLYLFKELRAVNHN 160
D + R+VI IWG KTT + K MKS + + AV+HN
Sbjct: 186 DPKELDRTVISIWGFGGLGKTTLVRKVYDWEKGMKSFDCYSWI-AVSHN 233
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.135 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,410,670
Number of Sequences: 37544
Number of extensions: 163627
Number of successful extensions: 414
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 408
Number of HSP's gapped (non-prelim): 9
length of query: 165
length of database: 14,793,348
effective HSP length: 77
effective length of query: 88
effective length of database: 11,902,460
effective search space: 1047416480
effective search space used: 1047416480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)
- SilkBase 1999-2023 -