GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002025-TA|BGIBMGA002025-PA|undefined
         (165 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2829| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.3  
SB_39303| Best HMM Match : Chordopox_RPO7 (HMM E-Value=7.2)            28   4.4  
SB_3027| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.4  
SB_18995| Best HMM Match : rve (HMM E-Value=0.0012)                    28   4.4  
SB_39437| Best HMM Match : TLP-20 (HMM E-Value=1.5)                    27   7.7  

>SB_2829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 867

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/65 (21%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 86  IRSCGASASIKNGGVGTSSVLIVLHA-DSNQEIRSVIDIWGVKNYEKTTRRALNPESLKN 144
           +R+ G + + + G    + +   L    SN+    +++ W +K+ +KTT+ + N   + +
Sbjct: 751 VRTMGGACAFRKGSPWNARISARLREYKSNEYFDHLLNRWLLKSTKKTTQDSSNQLGIHH 810

Query: 145 MKSLY 149
           +K L+
Sbjct: 811 LKGLF 815


>SB_39303| Best HMM Match : Chordopox_RPO7 (HMM E-Value=7.2)
          Length = 109

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 10/31 (32%), Positives = 20/31 (64%)

Query: 37 VGEWHKDYKQMDSAIVENSPVTINEGQLYVY 67
          V +W+ +YK   + +V NS V++ E + +V+
Sbjct: 3  VADWNAEYKVSVAYLVSNSAVSVREAKPFVW 33


>SB_3027| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 886

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 60  NEGQLYVYENYFPGHTIKYIHVDNLAIRSCGASASIKNG 98
           NE ++      FP   +  IH  N  +R+ G +A IKNG
Sbjct: 476 NESKIIEVMKSFPNDELNLIHAANTHVRTTG-TARIKNG 513


>SB_18995| Best HMM Match : rve (HMM E-Value=0.0012)
          Length = 1225

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/43 (25%), Positives = 26/43 (60%)

Query: 104 SVLIVLHADSNQEIRSVIDIWGVKNYEKTTRRALNPESLKNMK 146
           + L+V +  S  ++++++  +GV+  E+  + AL  ++LK  K
Sbjct: 409 AALVVFYTPSKADMKAILHDYGVELSEEKMKEALKTKALKTKK 451


>SB_39437| Best HMM Match : TLP-20 (HMM E-Value=1.5)
          Length = 424

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/39 (35%), Positives = 19/39 (48%)

Query: 86  IRSCGASASIKNGGVGTSSVLIVLHADSNQEIRSVIDIW 124
           I + G+S  IK   V   SV ++ H +S  E     DIW
Sbjct: 84  IGNTGSSGEIKEHSVKEQSVGVIWHQNSRTEHHENKDIW 122


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.135    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,093,095
Number of Sequences: 59808
Number of extensions: 192405
Number of successful extensions: 594
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 591
Number of HSP's gapped (non-prelim): 5
length of query: 165
length of database: 16,821,457
effective HSP length: 77
effective length of query: 88
effective length of database: 12,216,241
effective search space: 1075029208
effective search space used: 1075029208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)