GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002025-TA|BGIBMGA002025-PA|undefined
         (165 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35595-5|CAA84636.1|  952|Caenorhabditis elegans Hypothetical pr...    27   5.1  

>Z35595-5|CAA84636.1|  952|Caenorhabditis elegans Hypothetical
           protein C01G6.5 protein.
          Length = 952

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 27  FCEKNKMPLEVGEWHKDYKQMDSAIVENSPVTINEGQLYV 66
           FCEKNK   +V E  +  +++   + E  P TI   +L V
Sbjct: 309 FCEKNKGSFKVDELSRRKEELAVMMEEEEPQTIEIRELLV 348


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.135    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,914,836
Number of Sequences: 27539
Number of extensions: 151320
Number of successful extensions: 387
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 386
Number of HSP's gapped (non-prelim): 1
length of query: 165
length of database: 12,573,161
effective HSP length: 76
effective length of query: 89
effective length of database: 10,480,197
effective search space: 932737533
effective search space used: 932737533
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)