GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002025-TA|BGIBMGA002025-PA|undefined
         (165 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g52100.1 68416.m05717 PHD finger family protein contains Pfam...    31   0.39 
At1g34470.1 68414.m04283 permease-related low similarity to puri...    31   0.51 
At4g09640.1 68417.m01584 expressed protein several hypothetical ...    30   0.68 
At1g71900.1 68414.m08312 expressed protein                             29   1.2  
At5g49880.1 68418.m06177 mitotic checkpoint family protein simil...    28   3.6  
At5g13320.1 68418.m01531 auxin-responsive GH3 family protein sim...    27   6.3  
At3g05970.1 68416.m00681 long-chain-fatty-acid--CoA ligase / lon...    27   6.3  

>At3g52100.1 68416.m05717 PHD finger family protein contains Pfam
           profile PF00628: PHD-finger
          Length = 696

 Score = 31.1 bits (67), Expect = 0.39
 Identities = 15/36 (41%), Positives = 21/36 (58%)

Query: 79  IHVDNLAIRSCGASASIKNGGVGTSSVLIVLHADSN 114
           IHV  LA+   G   + +N GVG+ S + V+ A SN
Sbjct: 61  IHVPKLAVFDTGPRIAARNVGVGSDSAMEVVAASSN 96


>At1g34470.1 68414.m04283 permease-related low similarity to purine
           permease [Arabidopsis thaliana] GI:7620007
          Length = 368

 Score = 30.7 bits (66), Expect = 0.51
 Identities = 12/23 (52%), Positives = 16/23 (69%)

Query: 104 SVLIVLHADSNQEIRSVIDIWGV 126
           S+ IVLHA   QEI SV+ +W +
Sbjct: 131 SITIVLHAPQEQEIDSVLQVWNL 153


>At4g09640.1 68417.m01584 expressed protein several hypothetical
           proteins - Arabidopsis thaliana
          Length = 386

 Score = 30.3 bits (65), Expect = 0.68
 Identities = 12/23 (52%), Positives = 17/23 (73%)

Query: 104 SVLIVLHADSNQEIRSVIDIWGV 126
           SV IVLHA   Q+I SV+++W +
Sbjct: 131 SVTIVLHAPQEQDIVSVLEVWNL 153


>At1g71900.1 68414.m08312 expressed protein
          Length = 343

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 12/23 (52%), Positives = 16/23 (69%)

Query: 104 SVLIVLHADSNQEIRSVIDIWGV 126
           S  IVLHA   +EI SVI++W +
Sbjct: 131 STTIVLHAPQEREIDSVIEVWNL 153


>At5g49880.1 68418.m06177 mitotic checkpoint family protein similar
           to mitotic checkpoint protein isoform MAD1a [Homo
           sapiens] GI:4580767; contains Pfam profile PF05557:
           Mitotic checkpoint protein
          Length = 726

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 110 HADSNQEIRSVIDIWGVKNYEKTTRRALNPESLKNMKSLYLFKELRAVNHNGG 162
           ++ +N  +  +++  GV+N  K T  AL  E  K  + L   +EL++ + + G
Sbjct: 539 YSAANTRVLRMVNTLGVENEAKQTIEALQAELQKTKERLQAVEELKSQSGDAG 591


>At5g13320.1 68418.m01531 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 575

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 51  IVENSPVTINEGQLYVYENYFPGHTIKYIHVD 82
           ++E+S + + +   Y   + FPGH + Y+ VD
Sbjct: 444 VLESSGLDLKDFTSYADTSTFPGHYVVYLEVD 475


>At3g05970.1 68416.m00681 long-chain-fatty-acid--CoA ligase /
           long-chain acyl-CoA synthetase (LACS6) strong similarity
           to AMP-binding protein (MF39P) gi:1617274 from Brassica
           napus, similar to putative long-chain-fatty-acid--CoA
           ligase (brain isozyme) GB:P33124 [Rattus norvegicus];
           contains Pfam AMP-binding enzyme domain PF00501;
           identical to cDNA AtLACS6 for long-chain acyl-CoA
           synthetase GI:22531705
          Length = 701

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 62  GQLYVYENYFPGHTIKYIHVDNLAIRSCGASASIKNG 98
           GQ ++Y + F    +  + VD   ++S  AS  IK G
Sbjct: 577 GQCFIYGDSFNSSLVAVVSVDPDVLKSWAASEGIKGG 613


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.135    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,723,355
Number of Sequences: 28952
Number of extensions: 143577
Number of successful extensions: 339
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 332
Number of HSP's gapped (non-prelim): 7
length of query: 165
length of database: 12,070,560
effective HSP length: 76
effective length of query: 89
effective length of database: 9,870,208
effective search space: 878448512
effective search space used: 878448512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)