Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002024-TA|BGIBMGA002024-
PA|IPR003659|Plexin/semaphorin/integrin, IPR002165|Plexin
         (442 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    30   0.56 
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    29   0.98 
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    28   3.0  
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa...    27   6.9  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    26   9.2  

>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 30.3 bits (65), Expect = 0.56
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 6/62 (9%)

Query: 263 NHNIKNGTVLWLTA--LPTCIQFSTCDECLNHDTTFNCTWCSRLQKCSSGTDRNKQSWEI 320
           ++ + NG V +L       C+ F+T  + +NH T  N    S +   SSGTD     W+ 
Sbjct: 462 SNTLSNGRVYYLDTRMYKVCLNFTTTQKDINHATISN----SGILVTSSGTDNQTFVWDS 517

Query: 321 KQ 322
           ++
Sbjct: 518 RK 519


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 29.5 bits (63), Expect = 0.98
 Identities = 19/50 (38%), Positives = 25/50 (50%)

Query: 59  DKIKAEHNITDLTIDNHEFYNSSFIGNAMFFNEYWANITTKGANAHRLLS 108
           D+++   N  D  I++ +F  SSF GN M   E  A IT   A  H  LS
Sbjct: 504 DRMQKLTNYDDHKINDFKFAVSSFRGNVMPAREAVARITKLVAKPHEQLS 553


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 16/45 (35%), Positives = 21/45 (46%)

Query: 165 DTSLTNDSYVKLKDDGDRFTVLWENVPLQEDLTKKFTFAATLYKN 209
           D++LTN    KLK    RFT   +  PL  D T K   +   Y +
Sbjct: 401 DSTLTNTGLTKLKQAMARFTTNTQMYPLVYDTTYKGIISTAGYSS 445


>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
           Swd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 357

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 11/46 (23%), Positives = 20/46 (43%)

Query: 25  GILKVTPTENTHKVSEPIDPDPDYDMRDISNFTPDKIKAEHNITDL 70
           G+   TPT N+H    P+   P    +++   TP  ++     + L
Sbjct: 301 GLASTTPTSNSHSTENPLAIIPSSTSKNLLPETPSIVRFNPRFSQL 346


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 289 CLNHDTTFNCTWCSRLQKCSSGTD 312
           CL  D  +   WC+ L+KC S  D
Sbjct: 801 CLQIDDVYPQCWCNLLEKCISTGD 824


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.132    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,108,384
Number of Sequences: 5004
Number of extensions: 90212
Number of successful extensions: 203
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 198
Number of HSP's gapped (non-prelim): 6
length of query: 442
length of database: 2,362,478
effective HSP length: 75
effective length of query: 367
effective length of database: 1,987,178
effective search space: 729294326
effective search space used: 729294326
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)