GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002024-TA|BGIBMGA002024-
PA|IPR003659|Plexin/semaphorin/integrin, IPR002165|Plexin
         (442 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   4.3  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     23   5.7  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   5.7  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   5.7  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    23   5.7  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   7.5  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 307 CSSGTDRNKQSWEIKQCNASALTNATTC 334
           CS G   +    EI +C+++   N  TC
Sbjct: 172 CSDGYSGSYCQTEINECDSAPCQNGGTC 199


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed
          protein.
          Length = 283

 Score = 22.6 bits (46), Expect = 5.7
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 74 NHEFYNSSFIGNAMFFNEYW 93
          NH+ YNS+ + N   +  Y+
Sbjct: 66 NHQNYNSNVLSNGYGYGNYY 85


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription
          factor Deformed protein.
          Length = 412

 Score = 22.6 bits (46), Expect = 5.7
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 74 NHEFYNSSFIGNAMFFNEYW 93
          NH+ YNS+ + N   +  Y+
Sbjct: 66 NHQNYNSNVLSNGYGYGNYY 85


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.6 bits (46), Expect = 5.7
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 74 NHEFYNSSFIGNAMFFNEYW 93
          NH+ YNS+ + N   +  Y+
Sbjct: 66 NHQNYNSNVLSNGYGYGNYY 85


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
          transcription factor TcDfd1 protein.
          Length = 126

 Score = 22.6 bits (46), Expect = 5.7
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 74 NHEFYNSSFIGNAMFFNEYW 93
          NH+ YNS+ + N   +  Y+
Sbjct: 66 NHQNYNSNVLSNGYGYGNYY 85


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 22.2 bits (45), Expect = 7.5
 Identities = 12/59 (20%), Positives = 26/59 (44%)

Query: 34  NTHKVSEPIDPDPDYDMRDISNFTPDKIKAEHNITDLTIDNHEFYNSSFIGNAMFFNEY 92
           N  K  E I    ++D++ +SN+T  + K    +  + +  +  ++   +     FN Y
Sbjct: 461 NRWKFIEFIRKVLEFDVKCVSNYTKQQSKIHLIVRSVFVTTYLMFDYCTVLRVQRFNNY 519


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.132    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,617
Number of Sequences: 317
Number of extensions: 5109
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 6
length of query: 442
length of database: 114,650
effective HSP length: 59
effective length of query: 383
effective length of database: 95,947
effective search space: 36747701
effective search space used: 36747701
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)