GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002024-TA|BGIBMGA002024-
PA|IPR003659|Plexin/semaphorin/integrin, IPR002165|Plexin
         (442 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0696 + 5735466-5735550,5735897-5735935,5737292-5737345,573...    31   1.4  

>11_01_0696 +
           5735466-5735550,5735897-5735935,5737292-5737345,
           5737374-5737549,5738030-5738233
          Length = 185

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 11/34 (32%), Positives = 24/34 (70%)

Query: 219 IPIDVNTIKNTSHPVKVGISDAYMTDAFYYQIPK 252
           +P++ +++KN+SHP +V  S  ++T+ F +  P+
Sbjct: 149 LPVENSSLKNSSHPSEVSASTDWITNRFRHHQPE 182


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.132    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,909,510
Number of Sequences: 37544
Number of extensions: 523259
Number of successful extensions: 991
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 990
Number of HSP's gapped (non-prelim): 1
length of query: 442
length of database: 14,793,348
effective HSP length: 84
effective length of query: 358
effective length of database: 11,639,652
effective search space: 4166995416
effective search space used: 4166995416
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)