Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002024-TA|BGIBMGA002024-
PA|IPR003659|Plexin/semaphorin/integrin, IPR002165|Plexin
(442 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58796| Best HMM Match : TIG (HMM E-Value=6.3e-22) 34 0.26
SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.26
SB_35201| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.1
SB_30312| Best HMM Match : rve (HMM E-Value=5.6e-15) 32 1.1
SB_27464| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.1
SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15) 32 1.1
SB_22626| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.1
SB_10123| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.1
SB_8339| Best HMM Match : rve (HMM E-Value=5.4e-31) 32 1.1
SB_6030| Best HMM Match : rve (HMM E-Value=8.7e-30) 32 1.1
SB_59241| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.1
SB_55004| Best HMM Match : rve (HMM E-Value=8.7e-30) 32 1.1
SB_45972| Best HMM Match : Ribosomal_L21e (HMM E-Value=9) 32 1.1
SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29) 32 1.1
SB_8458| Best HMM Match : Ribosomal_L21e (HMM E-Value=9) 32 1.1
SB_8293| Best HMM Match : zf-C2H2 (HMM E-Value=0.32) 32 1.1
SB_35785| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_15464| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.3
SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11) 30 4.3
SB_44542| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_31752| Best HMM Match : Bac_surface_Ag (HMM E-Value=0.0069) 29 5.7
SB_46556| Best HMM Match : CDtoxinA (HMM E-Value=1.1) 29 7.5
SB_52794| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.5
SB_50568| Best HMM Match : EGF (HMM E-Value=0) 29 7.5
SB_18985| Best HMM Match : TUDOR (HMM E-Value=8.3e-37) 29 7.5
SB_45906| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 10.0
SB_9517| Best HMM Match : GDI (HMM E-Value=1.8e-14) 29 10.0
>SB_58796| Best HMM Match : TIG (HMM E-Value=6.3e-22)
Length = 1709
Score = 33.9 bits (74), Expect = 0.26
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 281 IQFSTCDECLNHDTTFNCTWCSRLQKC 307
+ ++ C CLN D F C WC KC
Sbjct: 763 VAYTDCGTCLNADFNFKCGWCKSEGKC 789
Score = 28.7 bits (61), Expect = 10.0
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 280 CIQFSTCDECLNHDTTFNCTWCSRLQKCSS 309
C + C C ++ ++C WC+ KCSS
Sbjct: 609 CTKMKGCRPCA--ESVYDCDWCTYTGKCSS 636
>SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1829
Score = 33.9 bits (74), Expect = 0.26
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 3 QAPRADGNVSVTQIPLLGVNGSGILKVTPTENTHKVSEPIDPDPD 47
+ PR D N+S+ + L GV+ I + P +T + EP+ PD
Sbjct: 1755 EKPRGDSNISLGPMELAGVDTVPIESLVPPTSTTPICEPVATTPD 1799
>SB_35201| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 224
Score = 31.9 bits (69), Expect = 1.1
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 3 QAPRADGNVSVTQIPLLGVNGSGILKVTPTENTHKVSEPIDPDPD 47
+ PR + N+S+ + L GV+ I + P +T + EP+ PD
Sbjct: 150 EKPRGNSNISLGPMELAGVDTVPIESLVPPTSTTPICEPVAATPD 194
>SB_30312| Best HMM Match : rve (HMM E-Value=5.6e-15)
Length = 385
Score = 31.9 bits (69), Expect = 1.1
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 3 QAPRADGNVSVTQIPLLGVNGSGILKVTPTENTHKVSEPIDPDPD 47
+ PR + N+S+ + L GV+ I + P +T + EP+ PD
Sbjct: 317 EKPRGNSNISLGPMELAGVDTVPIESLVPPTSTTPICEPVAATPD 361
>SB_27464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 101
Score = 31.9 bits (69), Expect = 1.1
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 3 QAPRADGNVSVTQIPLLGVNGSGILKVTPTENTHKVSEPIDPDPD 47
+ PR + N+S+ + L GV+ I + P +T + EP+ PD
Sbjct: 27 EKPRGNSNISLGPMELAGVDTVPIESLVPPTSTTPICEPVAATPD 71
>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
Length = 710
Score = 31.9 bits (69), Expect = 1.1
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 3 QAPRADGNVSVTQIPLLGVNGSGILKVTPTENTHKVSEPIDPDPD 47
+ PR + N+S+ + L GV+ I + P +T + EP+ PD
Sbjct: 517 EKPRGNSNISLGPMELAGVDTVPIESLVPPTSTTPICEPVAATPD 561
>SB_22626| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 101
Score = 31.9 bits (69), Expect = 1.1
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 3 QAPRADGNVSVTQIPLLGVNGSGILKVTPTENTHKVSEPIDPDPD 47
+ PR + N+S+ + L GV+ I + P +T + EP+ PD
Sbjct: 27 EKPRGNSNISLGPMELAGVDTVPIESLVPPTSTTPICEPVAATPD 71
>SB_10123| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 683
Score = 31.9 bits (69), Expect = 1.1
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 3 QAPRADGNVSVTQIPLLGVNGSGILKVTPTENTHKVSEPIDPDPD 47
+ PR + N+S+ + L GV+ I + P +T + EP+ PD
Sbjct: 609 EKPRGNSNISLGPMELAGVDTVPIESLVPPTSTTPICEPVAATPD 653
>SB_8339| Best HMM Match : rve (HMM E-Value=5.4e-31)
Length = 351
Score = 31.9 bits (69), Expect = 1.1
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 3 QAPRADGNVSVTQIPLLGVNGSGILKVTPTENTHKVSEPIDPDPD 47
+ PR + N+S+ + L GV+ I + P +T + EP+ PD
Sbjct: 277 EKPRGNSNISLGPMELAGVDTVPIESLVPPTSTTPICEPVAATPD 321
>SB_6030| Best HMM Match : rve (HMM E-Value=8.7e-30)
Length = 1280
Score = 31.9 bits (69), Expect = 1.1
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 3 QAPRADGNVSVTQIPLLGVNGSGILKVTPTENTHKVSEPIDPDPD 47
+ PR + N+S+ + L GV+ I + P +T + EP+ PD
Sbjct: 1066 EKPRGNSNISLGPMELAGVDTVPIESLVPPTSTTPICEPVAATPD 1110
>SB_59241| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 31.9 bits (69), Expect = 1.1
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 3 QAPRADGNVSVTQIPLLGVNGSGILKVTPTENTHKVSEPIDPDPD 47
+ PR + N+S+ + L GV+ I + P +T + EP+ PD
Sbjct: 17 EKPRGNSNISLGPMELAGVDTVPIESLVPPTSTTPICEPVAATPD 61
>SB_55004| Best HMM Match : rve (HMM E-Value=8.7e-30)
Length = 682
Score = 31.9 bits (69), Expect = 1.1
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 3 QAPRADGNVSVTQIPLLGVNGSGILKVTPTENTHKVSEPIDPDPD 47
+ PR + N+S+ + L GV+ I + P +T + EP+ PD
Sbjct: 608 EKPRGNSNISLGPMELAGVDTVPIESLVPPTSTTPICEPVAATPD 652
>SB_45972| Best HMM Match : Ribosomal_L21e (HMM E-Value=9)
Length = 246
Score = 31.9 bits (69), Expect = 1.1
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 3 QAPRADGNVSVTQIPLLGVNGSGILKVTPTENTHKVSEPIDPDPD 47
+ PR + N+S+ + L GV+ I + P +T + EP+ PD
Sbjct: 172 EKPRGNSNISLGPMELAGVDTVPIESLVPPTSTTPICEPVAATPD 216
>SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29)
Length = 1544
Score = 31.9 bits (69), Expect = 1.1
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 3 QAPRADGNVSVTQIPLLGVNGSGILKVTPTENTHKVSEPIDPDPD 47
+ PR + N+S+ + L GV+ I + P +T + EP+ PD
Sbjct: 1223 EKPRGNSNISLGPMELAGVDTVPIESLVPPTSTTPICEPVAATPD 1267
>SB_8458| Best HMM Match : Ribosomal_L21e (HMM E-Value=9)
Length = 195
Score = 31.9 bits (69), Expect = 1.1
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 3 QAPRADGNVSVTQIPLLGVNGSGILKVTPTENTHKVSEPIDPDPD 47
+ PR + N+S+ + L GV+ I + P +T + EP+ PD
Sbjct: 121 EKPRGNSNISLGPMELAGVDTVPIESLVPPTSTTPICEPVAATPD 165
>SB_8293| Best HMM Match : zf-C2H2 (HMM E-Value=0.32)
Length = 316
Score = 31.9 bits (69), Expect = 1.1
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 3 QAPRADGNVSVTQIPLLGVNGSGILKVTPTENTHKVSEPIDPDPD 47
+ PR + N+S+ + L GV+ I + P +T + EP+ PD
Sbjct: 27 EKPRGNSNISLGPMELAGVDTVPIESLVPPTSTTPICEPVAATPD 71
>SB_35785| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1089
Score = 31.5 bits (68), Expect = 1.4
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 3 QAPRADGNVSVTQIPLLGVNGSGILKVTPTENTHKVSEPIDPDPD 47
+ P D N+S+ + L GV+ I + P +T + EP+ PD
Sbjct: 1026 EKPSGDSNISLGPMELAGVDTVPIESLVPPTSTTPICEPVAATPD 1070
>SB_15464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1042
Score = 30.3 bits (65), Expect = 3.3
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 185 VLWENVPLQEDLTKKFTFAATLYKNGDIV-FAYKNIPIDVNTIKNTSHP-VKVGISDAYM 242
VL E PL+++ + FA + G I A K+ P+ V ++ H VK ++DA +
Sbjct: 566 VLKEGDPLKQNYKVTYDFA---FLQGKITKTARKHDPLRVLRVRKLLHQAVKKHVTDALV 622
Query: 243 TDAFYYQIPKLTIYHRVSFKNHNIKNGTVLWLT 275
Y + + H V FK N+K T WL+
Sbjct: 623 AMTSYRR--DKCLMHHVPFKLMNLKWQTFGWLS 653
>SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)
Length = 3369
Score = 29.9 bits (64), Expect = 4.3
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 280 CIQFSTCDECLNHDTTFNCTWCSRLQKCSSG 310
C +++ C+ C N D NC WC Q+C G
Sbjct: 2319 CGKYTRCNTC-NQDP--NCGWCDSAQQCMPG 2346
>SB_44542| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 486
Score = 29.5 bits (63), Expect = 5.7
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 164 FDTSLTNDSYVKLKDDGDRFTVLWENVPLQEDLTKKFTFA 203
++ S+ N K R+ LW N L E+L KFTFA
Sbjct: 272 YERSIANVPLAAEKTLWRRYIYLWINYALYEELMAKFTFA 311
>SB_31752| Best HMM Match : Bac_surface_Ag (HMM E-Value=0.0069)
Length = 354
Score = 29.5 bits (63), Expect = 5.7
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 87 MFFNEYWANITTKGANAHRLLSNSHRRATMIQLSFTFPFYGYPIKDITV 135
M F N+ +G N + + R T QL FT PF+G +K V
Sbjct: 1 MVFGLKMNNLMGRGENVNADVGFGTRTKTNYQLGFTKPFHGKSVKSFRV 49
>SB_46556| Best HMM Match : CDtoxinA (HMM E-Value=1.1)
Length = 208
Score = 29.1 bits (62), Expect = 7.5
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Query: 253 LTIYHRVSFKNHNIKNGTVLWLTALPTCIQFS--TCDEC-------LNHDTTFNCTWCSR 303
+T++ RV+F++ + W L C+ F T +EC L+ TF T C+R
Sbjct: 148 ITLHERVTFRSITLHECVTFWSITLHECMTFRSITLNECVSFRSITLHESVTFRSTPCTR 207
>SB_52794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1408
Score = 29.1 bits (62), Expect = 7.5
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 12/60 (20%)
Query: 276 ALPTCIQFSTCDECLNHDTTFNCTWCSRLQKCSSG-TDRNKQSWEIKQCNASALTNATTC 334
AL C +TC+ N + T+NCT C G TDRN S +I +C ++ N TC
Sbjct: 675 ALGFCDNGATCN---NFNGTYNCT-------CVPGYTDRN-CSTDINECASNPCENGATC 723
Score = 29.1 bits (62), Expect = 7.5
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 12/60 (20%)
Query: 276 ALPTCIQFSTCDECLNHDTTFNCTWCSRLQKCSSG-TDRNKQSWEIKQCNASALTNATTC 334
AL C +TC+ N + T+NCT C G TDRN S +I +C ++ N TC
Sbjct: 795 ALGFCDNGATCN---NFNGTYNCT-------CVPGYTDRN-CSTDINECASNPCENGATC 843
>SB_50568| Best HMM Match : EGF (HMM E-Value=0)
Length = 792
Score = 29.1 bits (62), Expect = 7.5
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 12/60 (20%)
Query: 276 ALPTCIQFSTCDECLNHDTTFNCTWCSRLQKCSSG-TDRNKQSWEIKQCNASALTNATTC 334
AL C +TC+ N + T+NCT C G TDRN S +I +C ++ N TC
Sbjct: 4 ALGFCDNGATCN---NFNGTYNCT-------CVPGYTDRN-CSTDINECASNPCENGATC 52
Score = 29.1 bits (62), Expect = 7.5
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 12/60 (20%)
Query: 276 ALPTCIQFSTCDECLNHDTTFNCTWCSRLQKCSSG-TDRNKQSWEIKQCNASALTNATTC 334
AL C +TC+ N + T+NCT C G TDRN S +I +C ++ N TC
Sbjct: 124 ALGFCDNGATCN---NFNGTYNCT-------CVPGYTDRN-CSTDINECASNPCENGATC 172
>SB_18985| Best HMM Match : TUDOR (HMM E-Value=8.3e-37)
Length = 1219
Score = 29.1 bits (62), Expect = 7.5
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 1 MIQAPRADGNVSVTQIPLLGVNGSGILKVTPTENTHKVSEPIDPDPDYDMRDISNFTPDK 60
+I A AD VS T++P +GV + VT + P P+ D DI + P
Sbjct: 622 LISAREADSMVSRTELPQIGVTFD--VTVTHVSEPDCIYIQRVPPPETDDMDIYDADPTL 679
Query: 61 IKAEHNITDL 70
I AE + L
Sbjct: 680 ILAEDELERL 689
>SB_45906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 685
Score = 28.7 bits (61), Expect = 10.0
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 62 KAEHNITDLTIDNHEFYNSSFIGNAMFFNEYWANITTKGANAHRLLSNSHRRATMIQLSF 121
K HN L IDNHE + NA A+ + +++R T+ L F
Sbjct: 623 KIIHNFPPLVIDNHEL---PVVTNAKILGVTITEDLKWNAHVSECIKKANKRLTL--LPF 677
Query: 122 TFPFYG 127
FP +G
Sbjct: 678 IFPLFG 683
>SB_9517| Best HMM Match : GDI (HMM E-Value=1.8e-14)
Length = 175
Score = 28.7 bits (61), Expect = 10.0
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 216 YKNIPIDVNTIKNTSHPVKVGISDAYMTDAFYYQIPKLTIYH 257
Y+ +D NT H + + I+D+Y F + K+ +Y+
Sbjct: 5 YQKFGLDANTADFVGHAMALEINDSYKDQPFGQTVEKIKLYN 46
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.320 0.132 0.415
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,369,845
Number of Sequences: 59808
Number of extensions: 653451
Number of successful extensions: 1288
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1262
Number of HSP's gapped (non-prelim): 33
length of query: 442
length of database: 16,821,457
effective HSP length: 84
effective length of query: 358
effective length of database: 11,797,585
effective search space: 4223535430
effective search space used: 4223535430
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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