GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002024-TA|BGIBMGA002024-
PA|IPR003659|Plexin/semaphorin/integrin, IPR002165|Plexin
         (442 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35597-3|CAA84646.2|  498|Caenorhabditis elegans Hypothetical pr...   270   1e-72
Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical pr...    38   0.011
AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.     38   0.011
AL021470-3|CAA16291.2|  414|Caenorhabditis elegans Hypothetical ...    31   2.1  
AF077545-2|AAC26305.3|  356|Caenorhabditis elegans Hypothetical ...    31   2.1  
U28735-6|AAF99954.1| 1493|Caenorhabditis elegans Hypothetical pr...    30   2.8  
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ...    30   3.7  
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ...    30   3.7  
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ...    30   3.7  
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.      30   3.7  
Z81561-3|CAB04553.2|  350|Caenorhabditis elegans Hypothetical pr...    29   5.0  
Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical pr...    29   5.0  
AL032652-11|CAA21712.2|  350|Caenorhabditis elegans Hypothetical...    29   5.0  
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr...    29   6.5  
U39472-1|AAK31395.1|  534|Caenorhabditis elegans Cytochrome p450...    29   8.7  
AL132862-17|CAB60551.1|  266|Caenorhabditis elegans Hypothetical...    29   8.7  

>Z35597-3|CAA84646.2|  498|Caenorhabditis elegans Hypothetical
           protein C36E8.3 protein.
          Length = 498

 Score =  270 bits (663), Expect = 1e-72
 Identities = 156/400 (39%), Positives = 211/400 (52%), Gaps = 35/400 (8%)

Query: 74  NHEFYNS-SFIGNAMFFNEYWANIT-------TKGANAHRLLSNSHRRATMIQLSFTFPF 125
           +H++Y + +F+G+     +YW N+          G  +H LLS S+RRA   +L F FPF
Sbjct: 103 DHQYYQAETFVGDGETLKKYWINVEQFMKKPKAVGNTSHPLLSQSYRRAVGARLQFKFPF 162

Query: 126 YGYPIKDITVATGGFIHTGEHVHNWLAATQYIAPLMANFDTSLTNDSYVKLKDDGDRFTV 185
           YG+ + ++T+ATGGFI+ G+H HNWLAATQYIAPLMANF T L N+S +   DDG+ F V
Sbjct: 163 YGHKMSNLTIATGGFIYIGDHSHNWLAATQYIAPLMANFHTYL-NNSNIVYADDGELFVV 221

Query: 186 LWENVPLQEDLTK-KFTFAATLYKNGDIVFAYKNIPIDVNTIKNTSHPVKVGISDAYMTD 244
            W NV L+ED  +  FTF   L+KNGDIVF YK++P D++ I + +HPVK+GISDAYM  
Sbjct: 222 EWRNVQLKEDKDEHSFTFQTILHKNGDIVFIYKDVPYDISNISDANHPVKLGISDAYMFK 281

Query: 245 AFYYQ--IPKLTI--YHRVSFKNHNIKNGTVLWLTALPTCIQFSTCDECLNHDTT-FNCT 299
              +Q  +PK  I  YHR+      I + TV+ L A PTCI F TCD C N     FNC 
Sbjct: 282 HNLHQAAVPKRVIYEYHRIEIAAQKIVSNTVVILKAQPTCISFDTCDTCTNATLPHFNCL 341

Query: 300 WCSRLQK-----CS--SGTDRNKQSWEIKQCNASALTNATTCPATQSDXXXXXXXX-XXX 351
           WC   +      C+  +G  R +Q W   + N    + A  C A   D            
Sbjct: 342 WCHAKKSHGGPFCTDEAGLHRRRQHW--FEGNCYQRSKALYCDADDEDETYDEEDYPKSQ 399

Query: 352 XKPDNQSTTAADAVDHAKSRVQISV---------PVQRRPIXXXXXXXXXXXLICSLALW 402
             P+   T      D  K   + +            +  P             +  +  W
Sbjct: 400 LMPNGGHTVLPLDADKMKKTDKTTSEDSDEWKGHKKKEEPKGGVATLTMIVVFLVCIVAW 459

Query: 403 VVYAFKNPHTRSGQFLIKYRPSQWSWRRGEARYTAATIHM 442
           + YA+ NPHT SGQ LIKYRPS+W       RY +A++HM
Sbjct: 460 LAYAYYNPHTTSGQILIKYRPSRWHIPSSHVRY-SASVHM 498


>Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical
           protein K04B12.1 protein.
          Length = 1764

 Score = 38.3 bits (85), Expect = 0.011
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 280 CIQFSTCDECLNHDTTFNCTWCSRLQKCSS 309
           C  + TC  C++ +  +NC WCS L KCS+
Sbjct: 576 CSGYGTCSSCMSSE--YNCAWCSGLHKCSN 603



 Score = 31.1 bits (67), Expect = 1.6
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 274 LTALPTCIQFSTCDECLNHDTTFNCTWCSRLQKCSS 309
           L  L TC   S+C ECL       C WC   Q C++
Sbjct: 439 LEELSTCSHHSSCTECLVSVDPL-CQWCHPTQSCTT 473


>AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.
          Length = 1766

 Score = 38.3 bits (85), Expect = 0.011
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 280 CIQFSTCDECLNHDTTFNCTWCSRLQKCSS 309
           C  + TC  C++ +  +NC WCS L KCS+
Sbjct: 578 CSGYGTCSSCMSSE--YNCAWCSGLHKCSN 605



 Score = 31.1 bits (67), Expect = 1.6
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 274 LTALPTCIQFSTCDECLNHDTTFNCTWCSRLQKCSS 309
           L  L TC   S+C ECL       C WC   Q C++
Sbjct: 441 LEELSTCSHHSSCTECLVSVDPL-CQWCHPTQSCTT 475


>AL021470-3|CAA16291.2|  414|Caenorhabditis elegans Hypothetical
           protein Y17D7A.1 protein.
          Length = 414

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 275 TALPTCIQFSTCDECLNHDTTFNCTWCSRLQKC 307
           T +  C +   C   LN++  F+C +C RLQKC
Sbjct: 52  TTVKPCKKGGNCQNLLNNNGWFDCKFC-RLQKC 83


>AF077545-2|AAC26305.3|  356|Caenorhabditis elegans Hypothetical
           protein H41C03.2 protein.
          Length = 356

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 275 TALPTCIQFSTCDECLN-HDTTFNCTWCSRLQKC 307
           T L  C Q S+C++C    D   +C WC    +C
Sbjct: 24  TKLAKCSQLSSCEQCAGIVDREVSCRWCLGSSQC 57


>U28735-6|AAF99954.1| 1493|Caenorhabditis elegans Hypothetical protein
            F48E3.3 protein.
          Length = 1493

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 176  LKDDGDRFTVLWENVPLQEDLTKKFTFAATLYKNGDIVFAYKNIPIDVNTIKNTSHPVKV 235
            L DD +       N+   ++ T++     +L  +G +   +  I I V+ +KNT HPVK 
Sbjct: 1177 LSDDEEGVWSSLSNLVSSKEKTQEVINVFSL-ASGHLYERFMRIMI-VSVMKNTKHPVKF 1234

Query: 236  GISDAYMTDAFYYQIPKLTIYHRVSFK 262
             +   Y++  F   +P L  ++   ++
Sbjct: 1235 WLLKNYLSPQFKETLPTLAKHYGFEYE 1261


>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4c protein.
          Length = 1045

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 15/43 (34%), Positives = 22/43 (51%)

Query: 281 IQFSTCDECLNHDTTFNCTWCSRLQKCSSGTDRNKQSWEIKQC 323
           + ++  ++CLN  T F CT   R QK S      K+   +KQC
Sbjct: 63  VVYNDTEQCLNPLTGFQCTVEKRGQKASYQRQLVKKEKYVKQC 105


>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4b protein.
          Length = 1070

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 15/43 (34%), Positives = 22/43 (51%)

Query: 281 IQFSTCDECLNHDTTFNCTWCSRLQKCSSGTDRNKQSWEIKQC 323
           + ++  ++CLN  T F CT   R QK S      K+   +KQC
Sbjct: 63  VVYNDTEQCLNPLTGFQCTVEKRGQKASYQRQLVKKEKYVKQC 105


>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4a protein.
          Length = 1111

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 15/43 (34%), Positives = 22/43 (51%)

Query: 281 IQFSTCDECLNHDTTFNCTWCSRLQKCSSGTDRNKQSWEIKQC 323
           + ++  ++CLN  T F CT   R QK S      K+   +KQC
Sbjct: 63  VVYNDTEQCLNPLTGFQCTVEKRGQKASYQRQLVKKEKYVKQC 105


>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
          Length = 1111

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 15/43 (34%), Positives = 22/43 (51%)

Query: 281 IQFSTCDECLNHDTTFNCTWCSRLQKCSSGTDRNKQSWEIKQC 323
           + ++  ++CLN  T F CT   R QK S      K+   +KQC
Sbjct: 63  VVYNDTEQCLNPLTGFQCTVEKRGQKASYQRQLVKKEKYVKQC 105


>Z81561-3|CAB04553.2|  350|Caenorhabditis elegans Hypothetical
           protein Y63D3A.8 protein.
          Length = 350

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 31  PTENTHKVSEPIDPDPDYDMRDISNFTPDK 60
           P EN  +  E ++ +P+ D RD+S   P+K
Sbjct: 74  PPENEAEAGEQVEQEPEPDSRDLSAIPPNK 103


>Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical
           protein C08H9.2 protein.
          Length = 1220

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 4/90 (4%)

Query: 18  LLGVNGSGILKVTPTENTHKVSEPIDPDPDYDMRDISNFTPDKIKAEHNITDLTIDNHEF 77
           ++G  GSG+  +    ++H     + PD      D+ N   DK + +     LT  + E+
Sbjct: 505 IIGSKGSGVQVI---RDSHPNVSVVFPDAK-SKSDVVNIRGDKTEVDAVYKKLTALSKEY 560

Query: 78  YNSSFIGNAMFFNEYWANITTKGANAHRLL 107
             +++      F E+  +I  KG  + R L
Sbjct: 561 AENNYQQTVAIFKEFLKHIVGKGGASIRKL 590


>AL032652-11|CAA21712.2|  350|Caenorhabditis elegans Hypothetical
           protein Y63D3A.8 protein.
          Length = 350

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 31  PTENTHKVSEPIDPDPDYDMRDISNFTPDK 60
           P EN  +  E ++ +P+ D RD+S   P+K
Sbjct: 74  PPENEAEAGEQVEQEPEPDSRDLSAIPPNK 103


>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical protein
            F55H12.3 protein.
          Length = 2972

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 292  HDTTFNCTWCSRLQKCSSGTDRNKQSWEIKQCNASALTNAT 332
            HDT  N T C    KC  GT  NK+S +   C  +   N+T
Sbjct: 2560 HDTNGNVTICV---KCPEGTFANKESNKCIDCPINTYRNST 2597


>U39472-1|AAK31395.1|  534|Caenorhabditis elegans Cytochrome p450
           family protein 23A1 protein.
          Length = 534

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 239 DAYMTDAFYYQIPKLTIY--HRVSFKNHNIKNGTVLWLTA--LPTCIQFSTCD 287
           D YM    Y+ +  +T+Y  + +++K   + NG V WL A  +P+ I  +  D
Sbjct: 28  DNYMATYIYF-LTCITLYAIYELNYKRRRLPNGPVPWLVAGNMPSFINVNNVD 79


>AL132862-17|CAB60551.1|  266|Caenorhabditis elegans Hypothetical
           protein Y73F8A.23 protein.
          Length = 266

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 7/71 (9%)

Query: 22  NGSGILKVTPTENTHKVSEPIDP----DPDYDMRDISNFTPDKIKAE---HNITDLTIDN 74
           NGSGI      +  +K++E ID     +P     D  +F  D I ++   HNITD T+D 
Sbjct: 193 NGSGITGPYSYDEGYKMTEYIDKKLQAEPISQKFDYFDFWTDGICSQPDGHNITDGTLDE 252

Query: 75  HEFYNSSFIGN 85
              Y  S   N
Sbjct: 253 TTGYKWSQTNN 263


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.132    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,395,836
Number of Sequences: 27539
Number of extensions: 494449
Number of successful extensions: 1180
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1159
Number of HSP's gapped (non-prelim): 24
length of query: 442
length of database: 12,573,161
effective HSP length: 84
effective length of query: 358
effective length of database: 10,259,885
effective search space: 3673038830
effective search space used: 3673038830
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)