GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002024-TA|BGIBMGA002024-
PA|IPR003659|Plexin/semaphorin/integrin, IPR002165|Plexin
         (442 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44340.1 68416.m04764 sec23/sec24 transport family protein co...    31   1.2  
At5g57520.1 68418.m07187 zinc finger (C2H2 type) family protein ...    29   4.7  
At2g45910.1 68415.m05709 protein kinase family protein / U-box d...    29   6.2  
At2g19170.1 68415.m02237 subtilase family protein contains simil...    29   6.2  
At1g04580.1 68414.m00451 aldehyde oxidase, putative similar to a...    29   8.2  

>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
           contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
           PF04815: Sec23/Sec24 helical domain and PF04810:
           Sec23/Sec24 zinc finger
          Length = 1096

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 11  VSVTQIPLLGVNGSGILKVTPTENTHKVSEPIDPDPDYDMRDISNFTPDKIKAEHNITDL 70
           + + QIP  G + S I+  T  EN  K + P     DY  RD  N +P  ++   N    
Sbjct: 334 IDLNQIPRPGSSSSPIVYETRVEN--KANPPPPTTVDYITRDTGNSSPRYMRCTINQIPC 391

Query: 71  TID 73
           T+D
Sbjct: 392 TVD 394


>At5g57520.1 68418.m07187 zinc finger (C2H2 type) family protein
           (ZFP2) identical to zinc finger protein 2 (ZFP2)
           GI:790674 from [Arabidopsis thaliana]; contains Pfam
           domain, PF00096: Zinc finger, C2H2 type
          Length = 150

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 260 SFKNHNIKNGTVLWLTALPTCIQFST-CDECLNHDTTFNCTWCSR 303
           S+KNH +    VL  +++ +    ST    CL     F+C +C R
Sbjct: 15  SYKNHQLNLELVLEPSSMSSSSSSSTNSSSCLEQPRVFSCNYCQR 59


>At2g45910.1 68415.m05709 protein kinase family protein / U-box
           domain-containing protein contains Pfam profiles PF00069
           Eukaryotic protein kinase domain,  PF04564: U-box
           domain; supported by tandem duplication of  (GI:3386604)
           (TIGR_Ath1:At2g45920) [Arabidopsis thaliana]
          Length = 834

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 100 GANAHRLLSNSHRRATMIQLSFTFPFYGYPIKDITVATGGFIHTGEHVHNWLAATQYIAP 159
           G+++  L  N HR A      F  P +   ++D  VA  GF +  E +  WL +    +P
Sbjct: 749 GSSSFHLGRNEHRIAPPY---FICPIFQEVMQDPHVAADGFTYEAEAIRAWLDSEHDTSP 805

Query: 160 LMANFDTSLTN 170
            M N   S T+
Sbjct: 806 -MTNVKLSHTS 815


>At2g19170.1 68415.m02237 subtilase family protein contains
           similarity to meiotic serine proteinase TMP GI:6468325
           from [Lycopersicon esculentum]
          Length = 815

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 14/48 (29%), Positives = 22/48 (45%)

Query: 25  GILKVTPTENTHKVSEPIDPDPDYDMRDISNFTPDKIKAEHNITDLTI 72
           G L  TP  + H++    +   +YDM+  SNF    I   H +   T+
Sbjct: 686 GFLCTTPGISAHEIRNYTNTACNYDMKHPSNFNAPSIAVSHLVGTQTV 733


>At1g04580.1 68414.m00451 aldehyde oxidase, putative similar to
           aldehyde oxidases from Arabidopsis thaliana: GI:3172023,
           GI:3172025, GI:3172044; identical to cDNA putative
           aldehyde oxidase (AO2) mRNA, partial cds GI:2792305
          Length = 1337

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 33  ENTHKVSEPIDP-DPDYDMRDISNFTPDKIKAEHNITDLT 71
           E+  ++ + + P +P+ D+    +F  +KIK +HN+ D T
Sbjct: 189 ESREEMLKKLPPYNPEKDLITFPDFLKEKIKCQHNVLDQT 228


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.132    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,637,163
Number of Sequences: 28952
Number of extensions: 443687
Number of successful extensions: 874
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 873
Number of HSP's gapped (non-prelim): 5
length of query: 442
length of database: 12,070,560
effective HSP length: 83
effective length of query: 359
effective length of database: 9,667,544
effective search space: 3470648296
effective search space used: 3470648296
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)