Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002023-TA|BGIBMGA002023-PA|IPR007114|Major facilitator
superfamily, IPR003663|Sugar transporter, IPR000803|Facilitated
glucose transporter, IPR005828|General substrate transporter
         (574 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    24   3.0  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   5.2  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   6.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   9.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   9.1  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   9.1  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 10/38 (26%), Positives = 23/38 (60%)

Query: 57  KQELDTVQQVKEEIEELREYVDRLEEHTQRRKLRLLEQ 94
           +Q+   ++Q++E   E RE+ DR+    Q+++ +  +Q
Sbjct: 63  EQQRKEMEQMREREREQREHSDRVTSQQQQQQQQQQQQ 100


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.4 bits (48), Expect = 5.2
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 58  QELDTVQQVKEEIEELREYVDRLEEHTQRRKLRLLEQARTFCSHPQGLTFFLSYAILAAV 117
           Q L+   ++K ++E + E+   L+  TQ+       QAR +  +   +   + +   AAV
Sbjct: 192 QNLEDDVEIKVQVESVIEFEPGLDSFTQQLIEMKNAQARVYLLYASKMDANVIFQD-AAV 250

Query: 118 LGMLQFGY 125
           + M   GY
Sbjct: 251 MNMTGAGY 258


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.0 bits (47), Expect = 6.9
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 128 GVINAPSKNIANFMKDVYKKRYGIDLHDGT 157
           GV +  S+N+ N +K +Y+ +Y ID   G+
Sbjct: 16  GVTDIHSRNLTNSLKVIYEWKY-IDYDFGS 44


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 10/99 (10%)

Query: 63  VQQVKEEIEELREYVDRLEEHTQRRKL-RLLEQART-FCSHPQGLTFFLSYAILAAVLGM 120
           +Q +     + RE V ++EE+   RKL R + Q  T +  H     FF    IL  +   
Sbjct: 378 IQSLDSSRRQYREKVKQVEEYMAYRKLPREMRQRITEYFEHRYQGKFFDEELILGELSEK 437

Query: 121 LQ---FGYN--TGVINAP--SKNIANFMKDVYKK-RYGI 151
           L+     YN  + V + P  +   +NF+ DV  K RY +
Sbjct: 438 LREDVINYNCRSLVASVPFFANADSNFVSDVVTKLRYEV 476


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 10/99 (10%)

Query: 63  VQQVKEEIEELREYVDRLEEHTQRRKL-RLLEQART-FCSHPQGLTFFLSYAILAAVLGM 120
           +Q +     + RE V ++EE+   RKL R + Q  T +  H     FF    IL  +   
Sbjct: 346 IQSLDSSRRQYREKVKQVEEYMAYRKLPREMRQRITEYFEHRYQGKFFDEELILGELSEK 405

Query: 121 LQ---FGYN--TGVINAP--SKNIANFMKDVYKK-RYGI 151
           L+     YN  + V + P  +   +NF+ DV  K RY +
Sbjct: 406 LREDVINYNCRSLVASVPFFANADSNFVSDVVTKLRYEV 444


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 503 TKNKTFEEILALFRNTNGSRLYGSMMN 529
           +KN T  +I  L    N +++Y S +N
Sbjct: 510 SKNNTIVDISKLVNKRNNAKIYTSSVN 536


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.137    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,547
Number of Sequences: 429
Number of extensions: 4623
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 7
length of query: 574
length of database: 140,377
effective HSP length: 61
effective length of query: 513
effective length of database: 114,208
effective search space: 58588704
effective search space used: 58588704
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 46 (22.6 bits)