Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002022-TA|BGIBMGA002022-PA|undefined
(136 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL450998-10|CAH70858.1| 3664|Homo sapiens SMART/HDAC1 associated... 29 5.3
AL096858-1|CAB51072.1| 3261|Homo sapiens hypothetical protein pr... 29 5.3
AL034555-4|CAI19526.1| 3664|Homo sapiens SMART/HDAC1 associated ... 29 5.3
AF356524-1|AAK52750.1| 3664|Homo sapiens nuclear receptor transc... 29 5.3
AB023146-1|BAA76773.1| 1663|Homo sapiens KIAA0929 protein protein. 29 5.3
BC112059-1|AAI12060.1| 383|Homo sapiens methenyltetrahydrofolat... 29 7.0
BC112057-1|AAI12058.1| 383|Homo sapiens methenyltetrahydrofolat... 29 7.0
AK023955-1|BAB14739.1| 382|Homo sapiens protein ( Homo sapiens ... 29 7.0
>AL450998-10|CAH70858.1| 3664|Homo sapiens SMART/HDAC1 associated
repressor protein (SHARP) protein.
Length = 3664
Score = 29.1 bits (62), Expect = 5.3
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 60 PYKVLRRDEKTVDIEVQGKT-QKVTIDRVKPAYVAREDLNASQSRIQSPNPVIRVPCAKN 118
P L D K D++ T +K+ +D P YV+ + ++ PV PC
Sbjct: 2514 PSPALPPDTKASDVDTSSSTLRKILMD---PKYVSATSVTSTSVTTAIAEPVSAAPCLHE 2570
Query: 119 VKPRPL 124
P P+
Sbjct: 2571 APPPPV 2576
>AL096858-1|CAB51072.1| 3261|Homo sapiens hypothetical protein
protein.
Length = 3261
Score = 29.1 bits (62), Expect = 5.3
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 60 PYKVLRRDEKTVDIEVQGKT-QKVTIDRVKPAYVAREDLNASQSRIQSPNPVIRVPCAKN 118
P L D K D++ T +K+ +D P YV+ + ++ PV PC
Sbjct: 2111 PSPALPPDTKASDVDTSSSTLRKILMD---PKYVSATSVTSTSVTTAIAEPVSAAPCLHE 2167
Query: 119 VKPRPL 124
P P+
Sbjct: 2168 APPPPV 2173
>AL034555-4|CAI19526.1| 3664|Homo sapiens SMART/HDAC1 associated
repressor protein (SHARP) protein.
Length = 3664
Score = 29.1 bits (62), Expect = 5.3
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 60 PYKVLRRDEKTVDIEVQGKT-QKVTIDRVKPAYVAREDLNASQSRIQSPNPVIRVPCAKN 118
P L D K D++ T +K+ +D P YV+ + ++ PV PC
Sbjct: 2514 PSPALPPDTKASDVDTSSSTLRKILMD---PKYVSATSVTSTSVTTAIAEPVSAAPCLHE 2570
Query: 119 VKPRPL 124
P P+
Sbjct: 2571 APPPPV 2576
>AF356524-1|AAK52750.1| 3664|Homo sapiens nuclear receptor
transcription cofactor protein.
Length = 3664
Score = 29.1 bits (62), Expect = 5.3
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 60 PYKVLRRDEKTVDIEVQGKT-QKVTIDRVKPAYVAREDLNASQSRIQSPNPVIRVPCAKN 118
P L D K D++ T +K+ +D P YV+ + ++ PV PC
Sbjct: 2514 PSPALPPDTKASDVDTSSSTLRKILMD---PKYVSATSVTSTSVTTAIAEPVSAAPCLHE 2570
Query: 119 VKPRPL 124
P P+
Sbjct: 2571 APPPPV 2576
>AB023146-1|BAA76773.1| 1663|Homo sapiens KIAA0929 protein protein.
Length = 1663
Score = 29.1 bits (62), Expect = 5.3
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 60 PYKVLRRDEKTVDIEVQGKT-QKVTIDRVKPAYVAREDLNASQSRIQSPNPVIRVPCAKN 118
P L D K D++ T +K+ +D P YV+ + ++ PV PC
Sbjct: 513 PSPALPPDTKASDVDTSSSTLRKILMD---PKYVSATSVTSTSVTTAIAEPVSAAPCLHE 569
Query: 119 VKPRPL 124
P P+
Sbjct: 570 APPPPV 575
>BC112059-1|AAI12060.1| 383|Homo sapiens methenyltetrahydrofolate
synthetase domain containing protein.
Length = 383
Score = 28.7 bits (61), Expect = 7.0
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 72 DIEVQGKTQKVTIDRVKPAYVAREDLNASQSRIQSPNPVIRVPCAKNVKPRP 123
D++V +TQ+V +D KP R + S+ + P P +R + P P
Sbjct: 52 DLDVFARTQEVKVDPDKPLEGVRLLVLQSKKTLLVPTPRLRTGLFNKITPPP 103
>BC112057-1|AAI12058.1| 383|Homo sapiens methenyltetrahydrofolate
synthetase domain containing protein.
Length = 383
Score = 28.7 bits (61), Expect = 7.0
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 72 DIEVQGKTQKVTIDRVKPAYVAREDLNASQSRIQSPNPVIRVPCAKNVKPRP 123
D++V +TQ+V +D KP R + S+ + P P +R + P P
Sbjct: 52 DLDVFARTQEVKVDPDKPLEGVRLLVLQSKKTLLVPTPRLRTGLFNKITPPP 103
>AK023955-1|BAB14739.1| 382|Homo sapiens protein ( Homo sapiens
cDNA FLJ13893 fis, clone THYRO1001661. ).
Length = 382
Score = 28.7 bits (61), Expect = 7.0
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 72 DIEVQGKTQKVTIDRVKPAYVAREDLNASQSRIQSPNPVIRVPCAKNVKPRP 123
D++V +TQ+V +D KP R + S+ + P P +R + P P
Sbjct: 51 DLDVFARTQEVKVDPDKPLEGVRLLVLQSKKTLLVPTPRLRTGLFNKITPPP 102
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.317 0.131 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,650,215
Number of Sequences: 224733
Number of extensions: 790230
Number of successful extensions: 1459
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1456
Number of HSP's gapped (non-prelim): 8
length of query: 136
length of database: 73,234,838
effective HSP length: 82
effective length of query: 54
effective length of database: 54,806,732
effective search space: 2959563528
effective search space used: 2959563528
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)
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