Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002022-TA|BGIBMGA002022-PA|undefined
         (136 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   6.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               20   8.2  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 8/23 (34%), Positives = 11/23 (47%)

Query: 17  PQPTSWYTSSSRPFYVPKDLRTA 39
           P   SW      PF +P +L +A
Sbjct: 640 PLTISWLKDGQSPFPLPPNLASA 662


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 36  LRTATHVFLRQGPARRSLQAPYLGPYKVLRRDEKTVDIEVQGKTQ 80
           + T     LR+G        P  GP    ++ E  +D   + KT+
Sbjct: 184 ISTPVEAHLRKGRGAIGAYGPEKGPKVPEKKKEDEIDEGKESKTK 228


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.131    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,231
Number of Sequences: 429
Number of extensions: 1673
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 136
length of database: 140,377
effective HSP length: 52
effective length of query: 84
effective length of database: 118,069
effective search space:  9917796
effective search space used:  9917796
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.3 bits)
S2: 40 (20.2 bits)