Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002022-TA|BGIBMGA002022-PA|undefined
(136 letters)
Database: tribolium
317 sequences; 114,650 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY043293-2|AAK96034.1| 353|Tribolium castaneum homeodomain tran... 26 0.11
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 23 0.98
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 23 0.98
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 23 0.98
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 23 0.98
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 23 0.98
AF217810-1|AAF71998.1| 431|Tribolium castaneum fork head orthol... 23 1.3
AF231104-1|AAF64149.1| 142|Tribolium castaneum labial protein p... 22 1.7
AF231103-1|AAF64148.1| 142|Tribolium castaneum labial protein p... 22 1.7
AJ876407-1|CAI45288.1| 590|Tribolium castaneum phosphatase prot... 21 4.0
AY873913-1|AAW67569.2| 377|Tribolium castaneum chitinase 2 prot... 21 5.2
>AY043293-2|AAK96034.1| 353|Tribolium castaneum homeodomain
transcription factor Labialprotein.
Length = 353
Score = 26.2 bits (55), Expect = 0.11
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 73 IEVQGKTQKVTIDRVKPAYVAREDLNASQSRIQSPNPVIRVPC 115
++V+ K T+ ++ PA +S S ++SPNP R C
Sbjct: 200 MQVKRNVPKPTVPKIPPAEFPT---TSSSSALESPNPASRSSC 239
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript
variant 5 protein.
Length = 311
Score = 23.0 bits (47), Expect = 0.98
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 47 GPARRSLQAPYLGPYKVLRRD--EKTVDIEVQ-GKTQKVTID 85
GP + L LGPY VL R ++ +EV+ G T + ID
Sbjct: 1 GPHEKRLLNNLLGPYNVLERPVANESEPLEVKFGLTLQQIID 42
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript
variant 4 protein.
Length = 311
Score = 23.0 bits (47), Expect = 0.98
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 47 GPARRSLQAPYLGPYKVLRRD--EKTVDIEVQ-GKTQKVTID 85
GP + L LGPY VL R ++ +EV+ G T + ID
Sbjct: 1 GPHEKRLLNNLLGPYNVLERPVANESEPLEVKFGLTLQQIID 42
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript
variant 3 protein.
Length = 311
Score = 23.0 bits (47), Expect = 0.98
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 47 GPARRSLQAPYLGPYKVLRRD--EKTVDIEVQ-GKTQKVTID 85
GP + L LGPY VL R ++ +EV+ G T + ID
Sbjct: 1 GPHEKRLLNNLLGPYNVLERPVANESEPLEVKFGLTLQQIID 42
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript
variant 2 protein.
Length = 311
Score = 23.0 bits (47), Expect = 0.98
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 47 GPARRSLQAPYLGPYKVLRRD--EKTVDIEVQ-GKTQKVTID 85
GP + L LGPY VL R ++ +EV+ G T + ID
Sbjct: 1 GPHEKRLLNNLLGPYNVLERPVANESEPLEVKFGLTLQQIID 42
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript
variant 1 protein.
Length = 311
Score = 23.0 bits (47), Expect = 0.98
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 47 GPARRSLQAPYLGPYKVLRRD--EKTVDIEVQ-GKTQKVTID 85
GP + L LGPY VL R ++ +EV+ G T + ID
Sbjct: 1 GPHEKRLLNNLLGPYNVLERPVANESEPLEVKFGLTLQQIID 42
>AF217810-1|AAF71998.1| 431|Tribolium castaneum fork head
orthologue protein.
Length = 431
Score = 22.6 bits (46), Expect = 1.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 12 MSKLTPQPTSWYTSSSRPFYVPKDLRTA 39
MS Q S +TSS+ PF + + L TA
Sbjct: 352 MSHHLKQEPSGFTSSNHPFSINRLLPTA 379
>AF231104-1|AAF64149.1| 142|Tribolium castaneum labial protein
protein.
Length = 142
Score = 22.2 bits (45), Expect = 1.7
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 99 ASQSRIQSPNPVIRVPC 115
+S S ++SPNP R C
Sbjct: 12 SSSSALESPNPASRSSC 28
>AF231103-1|AAF64148.1| 142|Tribolium castaneum labial protein
protein.
Length = 142
Score = 22.2 bits (45), Expect = 1.7
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 99 ASQSRIQSPNPVIRVPC 115
+S S ++SPNP R C
Sbjct: 12 SSSSALESPNPASRSSC 28
>AJ876407-1|CAI45288.1| 590|Tribolium castaneum phosphatase
protein.
Length = 590
Score = 21.0 bits (42), Expect = 4.0
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 113 VPCAKNVKPRPLQHVAGA 130
+PC K + P QHV A
Sbjct: 329 LPCVKELVADPNQHVKSA 346
>AY873913-1|AAW67569.2| 377|Tribolium castaneum chitinase 2
protein.
Length = 377
Score = 20.6 bits (41), Expect = 5.2
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 21 SWYTSSSRPFYVPKDLRTATHVFLRQGPARRSLQAPYL-----GPY 61
+W + + P + L H F PA+ L AP + GPY
Sbjct: 242 NWVNAGADPGKLTIGLAFYGHTFQLADPAQHDLGAPVIDAGMSGPY 287
Database: tribolium
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 114,650
Number of sequences in database: 317
Lambda K H
0.317 0.131 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,235
Number of Sequences: 317
Number of extensions: 1226
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of query: 136
length of database: 114,650
effective HSP length: 51
effective length of query: 85
effective length of database: 98,483
effective search space: 8371055
effective search space used: 8371055
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
S2: 39 (19.8 bits)
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