GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002022-TA|BGIBMGA002022-PA|undefined
         (136 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos...    27   1.0  
SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces...    27   1.0  
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    26   1.8  
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    26   2.4  
SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb...    25   4.1  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    25   5.5  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        24   9.5  

>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
           Caf16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 35  DLRTATHVFLRQGPARR-SLQAPYLGPYKVLRRDEKTVDIEV 75
           DLR   H  +  G  RR  L    L P++VL  DE TVD++V
Sbjct: 121 DLRWRMHA-VSDGERRRVQLCMGLLRPFEVLLLDEVTVDLDV 161


>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 336

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 16/59 (27%), Positives = 27/59 (45%)

Query: 2   GNLVSRLRTHMSKLTPQPTSWYTSSSRPFYVPKDLRTATHVFLRQGPARRSLQAPYLGP 60
           G  VS+L+   S  +   +S+  +   P  VPK        F+R  PA ++ + P+  P
Sbjct: 241 GGSVSKLKPTFSNDSRSLSSYAPTVREPVPVPKSNSGFRFPFMRNKPAEQAPENPFRDP 299


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 3/41 (7%)

Query: 19  PTSW---YTSSSRPFYVPKDLRTATHVFLRQGPARRSLQAP 56
           P  W   YT   RP++V  + RT T V  R+    RS   P
Sbjct: 291 PPGWEQRYTPEGRPYFVDHNTRTTTWVDPRRQQYIRSYGGP 331


>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 29  PFYVPKDLRTATHVFLRQGPARR 51
           PFYV  D R   + FL++ P +R
Sbjct: 309 PFYVTSDARDIINKFLKKNPKQR 331


>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 476

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 3   NLVSRLRTHMSKLTPQPTSWYTSSSRPF 30
           N +++L T  S  TPQPT++ T  +  F
Sbjct: 371 NSLNQLPTSSSAFTPQPTTFNTGYTSAF 398


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 3/27 (11%)

Query: 19  PTSW---YTSSSRPFYVPKDLRTATHV 42
           P  W   YT + RP++V  + RT T V
Sbjct: 309 PFGWEMRYTDTGRPYFVDHNTRTTTWV 335


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 8/67 (11%)

Query: 20  TSWYTSSSRPFYVPKDLRTATHVFLRQG---PARRSLQAPYLGPYK--VLRRDEKTVDIE 74
           T+ Y SS  PF +         +FLR     P        Y  P +  +     KTV IE
Sbjct: 481 TTAYASSKNPFDIAS---IVARLFLRSRKLIPLEEECAVQYHLPKREELQSNSNKTVIIE 537

Query: 75  VQGKTQK 81
           + GK+Q+
Sbjct: 538 ISGKSQE 544


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.131    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 619,532
Number of Sequences: 5004
Number of extensions: 22853
Number of successful extensions: 50
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 44
Number of HSP's gapped (non-prelim): 7
length of query: 136
length of database: 2,362,478
effective HSP length: 66
effective length of query: 70
effective length of database: 2,032,214
effective search space: 142254980
effective search space used: 142254980
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 49 (23.8 bits)