Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002022-TA|BGIBMGA002022-PA|undefined
(136 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0142 - 21217375-21217518,21217851-21217899,21218191-212182... 30 0.75
01_06_0892 + 32763195-32764149,32764489-32764575,32764665-327648... 28 2.3
03_05_0850 + 28206166-28206767,28207648-28207891,28208076-282083... 27 5.3
12_01_0541 + 4251931-4254141 27 6.9
09_06_0328 + 22365308-22365415,22365743-22366018,22366166-223664... 27 6.9
05_03_0559 - 15460348-15460357,15460966-15461290,15461340-15462306 27 6.9
04_01_0069 - 697811-697876,697956-698166,698265-698359,698448-69... 27 6.9
02_05_1169 + 34656450-34656603,34657321-34657481,34657907-346579... 27 6.9
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 26 9.2
02_04_0562 - 23886272-23886357,23886456-23886571,23887045-238871... 26 9.2
>03_05_0142 -
21217375-21217518,21217851-21217899,21218191-21218258,
21218368-21218413,21218548-21218641,21218775-21218837,
21219018-21219171,21219414-21219476,21219568-21219681,
21219779-21219844,21220813-21220870,21221859-21221932,
21222045-21222110,21223139-21223187,21223483-21223550,
21223660-21223705,21223908-21224001,21224117-21224179,
21224290-21224412,21224503-21224536,21224906-21224968,
21225825-21225911,21226293-21226370
Length = 587
Score = 29.9 bits (64), Expect = 0.75
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 10 THMSKLTPQPTSWYTSSSRPFYVPKD 35
TH+S L P+P +Y S P +P D
Sbjct: 333 THLSPLPPEPADFYNDFSTPVDIPMD 358
>01_06_0892 +
32763195-32764149,32764489-32764575,32764665-32764829,
32764904-32766219
Length = 840
Score = 28.3 bits (60), Expect = 2.3
Identities = 19/71 (26%), Positives = 33/71 (46%)
Query: 42 VFLRQGPARRSLQAPYLGPYKVLRRDEKTVDIEVQGKTQKVTIDRVKPAYVAREDLNASQ 101
+ L Q A R L+AP++ P R + D+ VQ T +++I+R + E S+
Sbjct: 489 LLLSQLSASRGLEAPWVDPGPSPRAYGRGDDLIVQNITNRISIERNASGLESLEGSTVSE 548
Query: 102 SRIQSPNPVIR 112
+S +R
Sbjct: 549 MEGESATERLR 559
>03_05_0850 +
28206166-28206767,28207648-28207891,28208076-28208389,
28209013-28209067
Length = 404
Score = 27.1 bits (57), Expect = 5.3
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 93 AREDLNASQSRIQSPNPVIRVPCAKNVKPR-PLQHVA-GASYLSK 135
A E L+ +++ +PN ++R+P P P+ H A GAS L++
Sbjct: 278 ALEKLHTKPTKLANPNSLLRIPKGITESPSPPISHGAVGASRLAE 322
>12_01_0541 + 4251931-4254141
Length = 736
Score = 26.6 bits (56), Expect = 6.9
Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
Query: 26 SSRPFYVPKDLRTATHVFLRQGPA 49
+ +PF+ PKD+RT VF+R+G A
Sbjct: 274 NGKPFHEPKDIRTL--VFVRRGLA 295
>09_06_0328 +
22365308-22365415,22365743-22366018,22366166-22366417,
22366542-22366939,22367028-22368021,22368199-22368409,
22368515-22368749,22368874-22368996,22369190-22369310,
22369416-22369625
Length = 975
Score = 26.6 bits (56), Expect = 6.9
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 20 TSWYTSSSRPFYVPKDLRTATHVFLRQGPARRSLQA 55
T W T+S+RP +V K T + V L P SL A
Sbjct: 319 TVWTTASARPLFVAKHFFTQSVVDLSWSPDGYSLFA 354
>05_03_0559 - 15460348-15460357,15460966-15461290,15461340-15462306
Length = 433
Score = 26.6 bits (56), Expect = 6.9
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 26 SSRPFYVPKDLRTATHVFLRQGPARRSLQAPYLGPYKVLRRDEKTVDIEVQG 77
+S Y +D RT HV +RQG + + A L P + R + ++ G
Sbjct: 53 ASSKVYCARDARTGAHVAVRQGHPKAAAAA--LPPMSLARGGRRGAEVRGAG 102
>04_01_0069 -
697811-697876,697956-698166,698265-698359,698448-698513,
698595-698643,698720-698770,698856-698908,699263-699331,
699874-699928,700011-700099,700217-700302,700376-700432,
700575-700716,701637-702032
Length = 494
Score = 26.6 bits (56), Expect = 6.9
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 65 RRDEKTVDIEVQGKTQKVTIDRVKPAYVAREDLNA 99
R D++ ++ + + +V DR K YV++ED+NA
Sbjct: 310 RLDDEIMEAQEKLNALRVDEDRRKLLYVSKEDINA 344
>02_05_1169 +
34656450-34656603,34657321-34657481,34657907-34657958,
34658289-34658425,34658775-34658861,34658939-34659226
Length = 292
Score = 26.6 bits (56), Expect = 6.9
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 58 LGPYKVLRRDEKTVDIEV 75
L PYKVL DE TVD++V
Sbjct: 164 LHPYKVLLLDEITVDLDV 181
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 26.2 bits (55), Expect = 9.2
Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 3/89 (3%)
Query: 48 PARRSLQAPYLGPYKVLRRDEKTVDIEV-QGKTQKVTIDRVKPAYVAREDLNASQSRIQS 106
P +SL + P V + + I V G Q+ + PA NAS S +
Sbjct: 281 PTSQSLLSSMFAPPSVAQAPQYADPIGVGAGGHQERAVPAKPPALCLAP--NASSSLFTA 338
Query: 107 PNPVIRVPCAKNVKPRPLQHVAGASYLSK 135
P P R A P P H++ + L K
Sbjct: 339 PVPADRQQFAPPPPPSPSPHMSATALLQK 367
>02_04_0562 -
23886272-23886357,23886456-23886571,23887045-23887127,
23887683-23887829,23887946-23887993,23888166-23888384,
23889370-23889541,23889636-23889700,23890386-23890512,
23891358-23891450,23891520-23891629,23891722-23891868,
23892161-23892473,23892580-23893178
Length = 774
Score = 26.2 bits (55), Expect = 9.2
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Query: 4 LVSRLRTHMSKLTPQPTSWYTSSSRPFYVPKDLRTATHVFLRQGPARRSLQAPYLGPYKV 63
++SR T K+ P+ T SS P V + T RR L+ + ++
Sbjct: 482 ILSRAFTVSGKMKPEEAVVATLSSLPDEVVDTVGTVLPSEDSVSERRRKLEFLEMQE-EL 540
Query: 64 LRRDEKTVDIEVQGKTQKVTIDRVKPAYVAREDL 97
++ +EK + E + K +K ++K A EDL
Sbjct: 541 IKEEEKKKEKEEKAKQEKEEKAKLKEPKAAEEDL 574
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.131 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,973,036
Number of Sequences: 37544
Number of extensions: 150946
Number of successful extensions: 388
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 383
Number of HSP's gapped (non-prelim): 10
length of query: 136
length of database: 14,793,348
effective HSP length: 75
effective length of query: 61
effective length of database: 11,977,548
effective search space: 730630428
effective search space used: 730630428
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)
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