GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002022-TA|BGIBMGA002022-PA|undefined
         (136 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15824| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.3  
SB_46327| Best HMM Match : Rho_N (HMM E-Value=4.2e-05)                 28   2.3  
SB_19890| Best HMM Match : Drf_FH1 (HMM E-Value=2.4)                   27   4.1  
SB_49535| Best HMM Match : RVT_1 (HMM E-Value=5.1e-32)                 27   5.4  
SB_7070| Best HMM Match : PHO4 (HMM E-Value=2.1e-36)                   27   5.4  
SB_50363| Best HMM Match : PHO4 (HMM E-Value=0)                        27   5.4  
SB_52212| Best HMM Match : Rho_N (HMM E-Value=5.2e-05)                 27   7.2  
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_36541| Best HMM Match : WD40 (HMM E-Value=0)                        27   7.2  
SB_29875| Best HMM Match : PHD (HMM E-Value=0.0014)                    27   7.2  
SB_18379| Best HMM Match : Rho_N (HMM E-Value=5.2e-05)                 27   7.2  
SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)               27   7.2  
SB_19314| Best HMM Match : Rho_N (HMM E-Value=5.2e-05)                 27   7.2  
SB_50629| Best HMM Match : Extensin_2 (HMM E-Value=0.94)               26   9.5  
SB_32384| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.5  
SB_9405| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00011)            26   9.5  
SB_3183| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.5  
SB_59318| Best HMM Match : WSC (HMM E-Value=0.00068)                   26   9.5  
SB_22497| Best HMM Match : Ras (HMM E-Value=7.7e-07)                   26   9.5  

>SB_15824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1258

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 14/37 (37%), Positives = 18/37 (48%)

Query: 98  NASQSRIQSPNPVIRVPCAKNVKPRPLQHVAGASYLS 134
           NAS+S +  P P I VP  K  KP    HV    + +
Sbjct: 120 NASESILDGPIPEIDVPILKPSKPTRSSHVQSLKHFA 156


>SB_46327| Best HMM Match : Rho_N (HMM E-Value=4.2e-05)
          Length = 856

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 14/37 (37%), Positives = 18/37 (48%)

Query: 98  NASQSRIQSPNPVIRVPCAKNVKPRPLQHVAGASYLS 134
           NAS+S +  P P I VP  K  KP    HV    + +
Sbjct: 120 NASESILDGPIPEIDVPILKPSKPTRSSHVQSLKHFA 156


>SB_19890| Best HMM Match : Drf_FH1 (HMM E-Value=2.4)
          Length = 169

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 81  KVTIDRVKPAYV--AREDLNASQSRIQSPNPVIRVPCAKNVKPRPLQ 125
           K  + RV P     A ED  + +    +P PV  VP  + VKPR LQ
Sbjct: 51  KPAVRRVPPPAPKKAPEDATSPKRNEAAPPPVNEVPPPRPVKPRHLQ 97


>SB_49535| Best HMM Match : RVT_1 (HMM E-Value=5.1e-32)
          Length = 991

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 6/119 (5%)

Query: 22  WYTSSSRPFYVPKDLRTATHVFLRQGPARRSLQAPY-----LGPYKVLRRDEKTVDIEVQ 76
           WY    R F   K   T+T V     P +RS+ A       LG   +L+ D       + 
Sbjct: 561 WYQPQERAFQAIKTKLTSTDVLAHYDPNKRSIVAAEACQDGLGAV-LLQSDSSGNQRPIA 619

Query: 77  GKTQKVTIDRVKPAYVAREDLNASQSRIQSPNPVIRVPCAKNVKPRPLQHVAGASYLSK 135
             ++ +     + A + +E L A+ +  +  + ++  P       RPL  +  ++ LSK
Sbjct: 620 FASRSLNDTEKRYAVIEKEALAATWACEKFSDYILGTPFTLETDHRPLVPLLSSTDLSK 678


>SB_7070| Best HMM Match : PHO4 (HMM E-Value=2.1e-36)
          Length = 290

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 9/73 (12%)

Query: 68  EKTVDIEVQGKTQKVTIDRVKPAYVARE-DLNASQSRIQSPNPVIR---VPCA--KNVKP 121
           EK+VD E  G T K++    KP   ARE +   S   I S  P  +   +P +  +++  
Sbjct: 17  EKSVDPEANGDTSKLSNGVTKP---ARELNCQVSHHSILSGTPTDKKQLIPDSPQEHLHE 73

Query: 122 RPLQHVAGASYLS 134
            PL+H+ G S L+
Sbjct: 74  HPLEHLHGPSDLN 86


>SB_50363| Best HMM Match : PHO4 (HMM E-Value=0)
          Length = 608

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 9/73 (12%)

Query: 68  EKTVDIEVQGKTQKVTIDRVKPAYVARE-DLNASQSRIQSPNPVIR---VPCA--KNVKP 121
           EK+VD E  G T K++    KP   ARE +   S   I S  P  +   +P +  +++  
Sbjct: 335 EKSVDPEANGDTSKLSNGVTKP---ARELNCQVSHHSILSGTPTDKKQLIPDSPQEHLHE 391

Query: 122 RPLQHVAGASYLS 134
            PL+H+ G S L+
Sbjct: 392 HPLEHLHGPSDLN 404


>SB_52212| Best HMM Match : Rho_N (HMM E-Value=5.2e-05)
          Length = 384

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/37 (35%), Positives = 17/37 (45%)

Query: 98  NASQSRIQSPNPVIRVPCAKNVKPRPLQHVAGASYLS 134
           N S+S +  P P I VP  K  KP    HV    + +
Sbjct: 72  NTSESILDGPIPEIDVPILKPSKPTRSSHVQSLKHFA 108


>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2520

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 44   LRQGPARRSLQAPYLGPYKVLRRDEKTVDIEVQGKTQKVTIDRVKPAYVAREDLNASQSR 103
            ++QG AR+  Q      Y+  R  EK V  E++ K Q +  + ++ +   REDL  S+ R
Sbjct: 1619 IKQGSARQEEQTKKYKAYQEKR--EKDV-AELREKVQSLEKELMETSEKLREDLRGSEKR 1675


>SB_36541| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 1070

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/37 (35%), Positives = 17/37 (45%)

Query: 98   NASQSRIQSPNPVIRVPCAKNVKPRPLQHVAGASYLS 134
            N S+S +  P P I VP  K  KP    HV    + +
Sbjct: 993  NTSESILDGPIPEIDVPILKPSKPTRSSHVQSLKHFA 1029


>SB_29875| Best HMM Match : PHD (HMM E-Value=0.0014)
          Length = 598

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 2/78 (2%)

Query: 46  QGPARRSLQAPYLGP--YKVLRRDEKTVDIEVQGKTQKVTIDRVKPAYVAREDLNASQSR 103
           Q P   S   P++ P  +++     K     +    +K+   R  P+ +A   L  S   
Sbjct: 26  QSPLIESKAVPFISPALFEMSLDKVKIFMNNIHPNRRKLIAPRSNPSSLAFRLLILSGDI 85

Query: 104 IQSPNPVIRVPCAKNVKP 121
             +P P  R PC   +KP
Sbjct: 86  PLNPGPTYRYPCGACLKP 103


>SB_18379| Best HMM Match : Rho_N (HMM E-Value=5.2e-05)
          Length = 398

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/37 (35%), Positives = 17/37 (45%)

Query: 98  NASQSRIQSPNPVIRVPCAKNVKPRPLQHVAGASYLS 134
           N S+S +  P P I VP  K  KP    HV    + +
Sbjct: 240 NTSESILDGPIPEIDVPILKPSKPTRSSHVQSLKHFA 276


>SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)
          Length = 4240

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/42 (33%), Positives = 19/42 (45%)

Query: 90   AYVAREDLNASQSRIQSPNPVIRVPCAKNVKPRPLQHVAGAS 131
            A +ARED     S    P P  +    KN KPR   +  G++
Sbjct: 2304 AGLAREDATFKSSSQPKPQPTAQQTILKNTKPRETLNRQGSN 2345


>SB_19314| Best HMM Match : Rho_N (HMM E-Value=5.2e-05)
          Length = 708

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/37 (35%), Positives = 17/37 (45%)

Query: 98  NASQSRIQSPNPVIRVPCAKNVKPRPLQHVAGASYLS 134
           N S+S +  P P I VP  K  KP    HV    + +
Sbjct: 120 NTSESILDGPIPEIDVPILKPSKPTRSSHVQSLKHFA 156


>SB_50629| Best HMM Match : Extensin_2 (HMM E-Value=0.94)
          Length = 450

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 4/92 (4%)

Query: 19  PTSWYTSSSRPFYVPKDLRTATHVFLRQGPARRSLQAPYLGPYKVLRRDEKTVDIEVQGK 78
           P S    S+ P  VP   R  +   +R    RR  Q+P   P    +R +    ++   +
Sbjct: 330 PLSSRQQSNSPRRVPLSPRQQSRPVVR---GRRYSQSPNRAPVSQRQRSQSPQRVQASPR 386

Query: 79  TQKVTIDRVKPAYVAREDLNASQS-RIQSPNP 109
            +  + D V P   ++    AS S R QS +P
Sbjct: 387 RRSQSPDHVSPRRKSQTPNRASTSTRQQSRSP 418


>SB_32384| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 609

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 53  LQAPYLGPYKVLRRDEKTVDIEVQGKTQKVTIDRVKP-AYVAREDLNASQSRIQSPNPVI 111
           L  P   P K + +   T   +V  K   + + ++K  A   +E L  +    + P PV+
Sbjct: 509 LAEPVTNPVKSVAKATATKVAKVVKKKADLVVKKLKAVAEKLKEALKKADPVAEKPKPVV 568

Query: 112 RVPCAKNV 119
               AKNV
Sbjct: 569 AKAVAKNV 576


>SB_9405| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00011)
          Length = 1092

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 98  NASQSRIQSPNPVIRVPCAKNVKPRPLQHVA 128
           N S+S +  P P I VP  K + P P +H A
Sbjct: 70  NTSESILDGPIPEINVPILKPL-PTPTEHFA 99


>SB_3183| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 142

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 9/34 (26%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 83  TIDRVKPAYVAREDLNASQSRIQSPNP-VIRVPC 115
           ++ R++PA++  +D  +   + Q P+P + R+ C
Sbjct: 106 SVGRIEPAHMRNKDAQSLTKKSQRPHPGICRIEC 139


>SB_59318| Best HMM Match : WSC (HMM E-Value=0.00068)
          Length = 553

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/37 (35%), Positives = 16/37 (43%)

Query: 25  SSSRPFYVPKDLRTATHVFLRQGPARRSLQAPYLGPY 61
           SSS P+Y+   L  A HV +           PY  PY
Sbjct: 106 SSSSPYYITTRLFHARHVRVEFDKTADRCNGPYADPY 142


>SB_22497| Best HMM Match : Ras (HMM E-Value=7.7e-07)
          Length = 769

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/45 (26%), Positives = 23/45 (51%)

Query: 67  DEKTVDIEVQGKTQKVTIDRVKPAYVAREDLNASQSRIQSPNPVI 111
           D+++   +   KT+K T+++V  A    E  + S S     NP++
Sbjct: 530 DDRSAKQDKTNKTRKATVEKVDVAETPSESSDDSDSDSNPRNPMV 574


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.131    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,692,881
Number of Sequences: 59808
Number of extensions: 181658
Number of successful extensions: 591
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 574
Number of HSP's gapped (non-prelim): 27
length of query: 136
length of database: 16,821,457
effective HSP length: 75
effective length of query: 61
effective length of database: 12,335,857
effective search space: 752487277
effective search space used: 752487277
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)