Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002021-TA|BGIBMGA002021-PA|IPR001304|C-type lectin,
IPR000436|Sushi/SCR/CCP, IPR008979|Galactose-binding like,
IPR006585|Fucolectin tachylectin-4 pentraxin-1
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    29   1.8  
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    29   2.3  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    28   4.1  
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    28   5.4  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   7.1  

>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 510 TQEPRRPKPKSTTERPTTKGYERFPEKKVTVPDSQDSATSHVPHIIVAS 558
           T+EP +P P+ ++  P     E   +  V+ P+ ++S  +H+  +I +S
Sbjct: 320 TKEPAKPVPQPSSNEPPAPSAEN-KQPSVSSPEKKESPATHLLKVIGSS 367


>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 8/78 (10%)

Query: 501 PLSSPTPFITQEPRRPKPKSTTERPTTKGYERFPEKKVTVPDSQDSATSHVPHIIVASHP 560
           P+S+PT  +T    +P P  +T   +T      P + V V   + S+    P ++    P
Sbjct: 458 PMSAPTSVLTGTSPQPSPSLSTSIMSTPKLN--PSESVVVASEKASSPDLSPKLL----P 511

Query: 561 RENQIIGSGNNIRAEQSP 578
            E+QI   G  I   Q+P
Sbjct: 512 SESQIFDEG--IAVTQTP 527


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/42 (33%), Positives = 19/42 (45%)

Query: 500 RPLSSPTPFITQEPRRPKPKSTTERPTTKGYERFPEKKVTVP 541
           RP  SP+P     P    P     +PT  G+ R  E+  T+P
Sbjct: 356 RPRRSPSPSHLSIPSTLPPADGVPKPTPDGFPRRFERDPTIP 397


>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 229 WVNGNDVTVSFWNAPGGGEGCARFDGSKGWLWADS 263
           W N N  T ++W+A  G  G A F  S G L AD+
Sbjct: 521 WSNTNYDTYAYWHATNGQTGIASF--SMGSLTADT 553


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 18/70 (25%), Positives = 27/70 (38%)

Query: 509 ITQEPRRPKPKSTTERPTTKGYERFPEKKVTVPDSQDSATSHVPHIIVASHPRENQIIGS 568
           + Q+P + +P  T     T+          T   S  +A     H   A  PR     GS
Sbjct: 761 VVQQPYQTQPSVTNNNVATQPVIASTVPVQTAAPSSQTAVPQTIHQSNAFTPRGKHASGS 820

Query: 569 GNNIRAEQSP 578
            N+I + +SP
Sbjct: 821 RNSISSTKSP 830


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.134    0.438 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,274,167
Number of Sequences: 5004
Number of extensions: 139085
Number of successful extensions: 222
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 221
Number of HSP's gapped (non-prelim): 5
length of query: 742
length of database: 2,362,478
effective HSP length: 78
effective length of query: 664
effective length of database: 1,972,166
effective search space: 1309518224
effective search space used: 1309518224
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)