Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002021-TA|BGIBMGA002021-PA|IPR001304|C-type lectin,
IPR000436|Sushi/SCR/CCP, IPR008979|Galactose-binding like,
IPR006585|Fucolectin tachylectin-4 pentraxin-1
         (742 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   6.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   6.8  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   9.0  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 6.8
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 6   EDSGVPQRALDGSTSATFSAETCSLTKQERVPWWYVNLLEPYMV 49
           E+SGV   A D STS    A+ C  T + R  W+     EP +V
Sbjct: 242 ENSGVVHVAQDESTSLVCVAQACP-TPEYR--WYAQTGSEPMLV 282


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 6.8
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 6   EDSGVPQRALDGSTSATFSAETCSLTKQERVPWWYVNLLEPYMV 49
           E+SGV   A D STS    A+ C  T + R  W+     EP +V
Sbjct: 242 ENSGVVHVAQDESTSLVCVAQACP-TPEYR--WYAQTGSEPMLV 282


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 10/34 (29%), Positives = 15/34 (44%)

Query: 420 SVAEYECSEGFVLQGPRRIACLASGLWDKSPPLC 453
           S+A  +   G  +  P  +  L  G W+  P LC
Sbjct: 78  SLAAADLLVGLAVMPPAVLLQLTGGTWELGPMLC 111


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.134    0.438 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,624
Number of Sequences: 429
Number of extensions: 9669
Number of successful extensions: 25
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 5
length of query: 742
length of database: 140,377
effective HSP length: 63
effective length of query: 679
effective length of database: 113,350
effective search space: 76964650
effective search space used: 76964650
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)