GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002021-TA|BGIBMGA002021-PA|IPR001304|C-type lectin,
IPR000436|Sushi/SCR/CCP, IPR008979|Galactose-binding like,
IPR006585|Fucolectin tachylectin-4 pentraxin-1
         (742 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    27   0.46 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    26   1.1  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     24   3.3  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    24   4.3  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    24   4.3  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    23   5.7  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   5.7  
EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    23   7.6  

>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 27.1 bits (57), Expect = 0.46
 Identities = 16/74 (21%), Positives = 25/74 (33%)

Query: 505 PTPFITQEPRRPKPKSTTERPTTKGYERFPEKKVTVPDSQDSATSHVPHIIVASHPRENQ 564
           PT   T  P   +P ST     +K  +  P+    VP+   S T     +     P    
Sbjct: 402 PTISTTPRPEWARPPSTPSADGSKPVQTTPKPGQWVPEKSTSTTQRTTTVSTTEAPPAPA 461

Query: 565 IIGSGNNIRAEQSP 578
           +    N +    +P
Sbjct: 462 VSNPQNEVDGSVAP 475


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)

Query: 499  IRPLSSPTP--FITQEPRRPKPKSTTERPTTK-GYE 531
            +R  + P P   + ++  + KPK TT +PTT  GYE
Sbjct: 2189 LRGYAKPDPKCILGRDNDKTKPKPTTMKPTTTIGYE 2224



 Score = 24.2 bits (50), Expect = 3.3
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 3/27 (11%)

Query: 515  RPKPKSTTERPTTKGYERFPEKKVTVP 541
            RP   STT RPTT  +   P +  T+P
Sbjct: 1064 RPTTTSTTTRPTTTNW---PTQGTTIP 1087


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 24.2 bits (50), Expect = 3.3
 Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 1/75 (1%)

Query: 347 GSYALMNGSVSYLSHVQYSCEAGYEMAGRSRLVCDIDERWNGPPPRCDVVQCEDPPQISN 406
           G + ++    +   +  + C   + +     LV  I E +  PP   D  QC D     N
Sbjct: 585 GGFTIIRFKATNPGYWLFHCHIEFHVEVGMALVFKIGEDYEMPPVPKDFPQCGDYVPSGN 644

Query: 407 GQVSMSHNASVFGSV 421
             V    +   FG++
Sbjct: 645 STVDCD-DVGTFGAI 658


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 135 QALPIERCPQFRDQPPGSTA 154
           Q  PI++ P    QPPG+TA
Sbjct: 206 QQPPIQQQPNQGQQPPGNTA 225


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 135 QALPIERCPQFRDQPPGSTA 154
           Q  PI++ P    QPPG+TA
Sbjct: 208 QQPPIQQQPNQGQQPPGNTA 227


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 190 NPALQGFISWELWRRHR--SDSSSQYWMGAVRDPQ 222
           N  L G ++   W++    +D++ +YW+    DPQ
Sbjct: 215 NSPLYGGVNESDWQQQNRNADAAIRYWLDGGADPQ 249


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 7/10 (70%), Positives = 9/10 (90%)

Query: 223 DPNNWKWVNG 232
           DP+ WK+VNG
Sbjct: 84  DPHRWKYVNG 93


>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 23.0 bits (47), Expect = 7.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)

Query: 137 LPIERCPQFRDQPP 150
           +PI +C   RD+PP
Sbjct: 246 IPIRQCDDHRDRPP 259


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.134    0.438 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,263
Number of Sequences: 317
Number of extensions: 8400
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 11
length of query: 742
length of database: 114,650
effective HSP length: 62
effective length of query: 680
effective length of database: 94,996
effective search space: 64597280
effective search space used: 64597280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)