Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002021-TA|BGIBMGA002021-PA|IPR001304|C-type lectin,
IPR000436|Sushi/SCR/CCP, IPR008979|Galactose-binding like,
IPR006585|Fucolectin tachylectin-4 pentraxin-1
(742 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1303 - 26006294-26006513,26006576-26007318 35 0.27
09_04_0584 - 18714461-18716296 33 0.63
08_02_1254 + 25607827-25607865,25608066-25608770 33 0.83
08_02_1302 - 25990378-25991457 33 1.1
07_03_1712 + 28932328-28932502,28932583-28932902,28933405-28933950 32 1.9
12_02_0080 + 13314740-13315892,13316725-13316732 31 2.5
03_05_0700 + 26920743-26920771,26920880-26920991,26921205-269213... 30 5.8
08_02_1309 - 26029691-26030609,26030850-26030925,26032198-26032579 30 7.7
08_02_1304 - 26008105-26009070 30 7.7
>08_02_1303 - 26006294-26006513,26006576-26007318
Length = 320
Score = 34.7 bits (76), Expect = 0.27
Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 101 LPCNPPMPGAFVSV---HLEGSSPSQLSICEAFVYTDQALPIERCPQFRDQPPGSTATYN 157
+P PP GA + +GS S E F + +A+ R P FR Q GS A
Sbjct: 145 IPVPPPNLGAQLGAMGGSADGSDASFAVGGETF-HAHRAVLAARSPVFRAQLLGSMAEAT 203
Query: 158 GKCYIFYDRQPATFRDALGF 177
C +D +PATF+ L F
Sbjct: 204 MPCVTLHDIEPATFKALLHF 223
>09_04_0584 - 18714461-18716296
Length = 611
Score = 33.5 bits (73), Expect = 0.63
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 507 PFITQEPRRPKPKSTTERPTTKGYERFPEKKVTVPDSQDSATSHVPHIIVA--------S 558
P+ + + RPK + + + G+ P T+P Q S + H +V +
Sbjct: 480 PYESSDNSRPKTGNIFPQDSDSGFNNMPSSYQTIPPKQPLPLSIMEHHVVPLGIRTPADN 539
Query: 559 HPRENQIIGSGNN 571
P +QIIGSGN+
Sbjct: 540 SPYSDQIIGSGNS 552
>08_02_1254 + 25607827-25607865,25608066-25608770
Length = 247
Score = 33.1 bits (72), Expect = 0.83
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 98 PLFLPCNPPMPGAFVSVHLEGSSPSQLSIC---EAFVYTDQALPIERCPQFRDQPPGSTA 154
P+ +P PP G ++ + + S +S E + +A+ R P F + GS A
Sbjct: 60 PIAVP--PPNLGGHLAAMVGSADGSDVSFSVGGETLIRAHRAVLAARSPVFSAELLGSMA 117
Query: 155 TYNGKCYIFYDRQPATFRDALGF 177
C +D +PATFR L F
Sbjct: 118 EGTMPCVTLHDIEPATFRALLHF 140
>08_02_1302 - 25990378-25991457
Length = 359
Score = 32.7 bits (71), Expect = 1.1
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 109 GAFVSVHLEGSSPSQLSICEAFVYTDQALPIERCPQFRDQPPGSTATYNGKCYIFYDRQP 168
GA V +GS S S+ + +A+ R P FR + GSTA C +D +P
Sbjct: 172 GAMVG-SADGSDVS-FSVGGETFHAHRAVLAARSPVFRVELLGSTAEATMPCVTLHDIEP 229
Query: 169 ATFRDALGF 177
TFR L F
Sbjct: 230 TTFRALLHF 238
>07_03_1712 + 28932328-28932502,28932583-28932902,28933405-28933950
Length = 346
Score = 31.9 bits (69), Expect = 1.9
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 545 DSATSHVPHIIVASHPRENQIIGSGNNIRAEQSPGVNVPQPVDGERREST 594
D H H + A HP NQ++G G+N AE P V G +R+++
Sbjct: 245 DPPADHHQHAL-AVHPSLNQLLGVGDNFLAECYPSTASTATVAGGKRKAS 293
>12_02_0080 + 13314740-13315892,13316725-13316732
Length = 386
Score = 31.5 bits (68), Expect = 2.5
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 370 YEMAGRSRLVCDIDERWNGPPPRCDVVQCEDPPQIS 405
Y+ A + R C + RW+G PP +V +C P Q+S
Sbjct: 352 YKDAAQRRYPCSDNGRWSGAPPPAEVERC-FPEQVS 386
>03_05_0700 +
26920743-26920771,26920880-26920991,26921205-26921306,
26921391-26921503,26921858-26921927,26922348-26922425,
26922500-26922616,26922738-26922832,26923080-26923159,
26923405-26923532
Length = 307
Score = 30.3 bits (65), Expect = 5.8
Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 4/80 (5%)
Query: 205 HRSDSSSQYWMGAVRDPQ--DPNNWKWVNGNDVTVSFWNAPGG--GEGCARFDGSKGWLW 260
H+ + Y + + P+ DPN + +D TV WN G + + LW
Sbjct: 216 HKLQAHDGYILKCLLSPEFCDPNRYLATASSDHTVKIWNVDGFKLEKTLVASSDTTARLW 275
Query: 261 ADSDCQARLNYICQHQPKTC 280
S +A Y H+P C
Sbjct: 276 TMSTGEAIRVYTSHHKPVVC 295
>08_02_1309 - 26029691-26030609,26030850-26030925,26032198-26032579
Length = 458
Score = 29.9 bits (64), Expect = 7.7
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 135 QALPIERCPQFRDQPPGSTATYNGKCYIFYDRQPATFRDALGF 177
+A+ R P FR + GS A C +D +P TFR L F
Sbjct: 289 RAVLAARSPVFRAELLGSMAEAKMSCITLHDIEPVTFRALLRF 331
>08_02_1304 - 26008105-26009070
Length = 321
Score = 29.9 bits (64), Expect = 7.7
Identities = 17/46 (36%), Positives = 22/46 (47%)
Query: 132 YTDQALPIERCPQFRDQPPGSTATYNGKCYIFYDRQPATFRDALGF 177
+ +A+ R P FR + GS A C D +PATFR L F
Sbjct: 166 HAHRAVLAARSPVFRAELLGSMAEATMPCVTLRDIEPATFRALLHF 211
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.134 0.438
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,220,939
Number of Sequences: 37544
Number of extensions: 1054162
Number of successful extensions: 2120
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2111
Number of HSP's gapped (non-prelim): 10
length of query: 742
length of database: 14,793,348
effective HSP length: 87
effective length of query: 655
effective length of database: 11,527,020
effective search space: 7550198100
effective search space used: 7550198100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 64 (29.9 bits)
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