GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002021-TA|BGIBMGA002021-PA|IPR001304|C-type lectin,
IPR000436|Sushi/SCR/CCP, IPR008979|Galactose-binding like,
IPR006585|Fucolectin tachylectin-4 pentraxin-1
         (742 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05545.1 68416.m00609 transcription factor, putative / zinc f...    34   0.39 
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex...    30   4.9  
At1g10620.1 68414.m01204 protein kinase family protein contains ...    30   4.9  
At5g66790.1 68418.m08420 protein kinase family protein contains ...    30   6.4  
At5g07820.1 68418.m00896 expressed protein                             30   6.4  
At3g06780.1 68416.m00805 glycine-rich protein                          29   8.5  

>At3g05545.1 68416.m00609 transcription factor, putative / zinc
           finger (C3HC4 type RING finger) family protein similar
           to VIP2 protein [Avena fatua] gi|6996144|emb|CAB75506;
           contains Pfam domain PF00097: Zinc finger, C3HC4 type
           (RING finger)
          Length = 425

 Score = 33.9 bits (74), Expect = 0.39
 Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 2/81 (2%)

Query: 168 PATFRDALGFCRSRGGTLVDESNPALQGFISWELWRRHRSDSSSQYWMGAVRDPQDPNNW 227
           P+  R A G     G T          GFI + +W R     S Q +     D ++PN W
Sbjct: 345 PSGRRPARGIASGMGSTSSSSDQAGGSGFIRFNIWERDPYMQSQQAYSVNQMD-REPNIW 403

Query: 228 KWVNGNDVTVSFWNAPGGGEG 248
              + N+ + SF    GGG G
Sbjct: 404 T-SSFNEGSGSFHQRHGGGGG 423


>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 727

 Score = 30.3 bits (65), Expect = 4.9
 Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 2/88 (2%)

Query: 501 PLSSPTPFITQEPRRPKPKSTTERPTTKGYERFPEKKVTVPDSQDSATSHVPHI-IVASH 559
           P  SP+P  T+   +P+P   + +P    Y + P K    P        HV H    AS 
Sbjct: 394 PSKSPSPVPTRPVHKPQPPKESPQPNDP-YNQSPVKFRRSPPPPQQPHHHVVHSPPPASS 452

Query: 560 PRENQIIGSGNNIRAEQSPGVNVPQPVD 587
           P  +  + S  +   +  P    PQP D
Sbjct: 453 PPTSPPVHSTPSPVHKPQPPKESPQPND 480


>At1g10620.1 68414.m01204 protein kinase family protein contains
           serine/threonine protein kinases active-site signature,
           PROSITE:PS00108
          Length = 718

 Score = 30.3 bits (65), Expect = 4.9
 Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 1/96 (1%)

Query: 501 PLSSPTPFITQEPRRPKPKSTTE-RPTTKGYERFPEKKVTVPDSQDSATSHVPHIIVASH 559
           P SSP P IT  P  P+P+   +  PT       P  K  +P         + + +    
Sbjct: 82  PPSSPPPSITPPPSPPQPQPPPQSTPTGDSPVVIPFPKPQLPPPSLFPPPSLVNQLPDPR 141

Query: 560 PRENQIIGSGNNIRAEQSPGVNVPQPVDGERRESTG 595
           P +N I+   NN  +  SP      P   E   S G
Sbjct: 142 PNDNNILEPINNPISLPSPPSTPFSPPSQENSGSQG 177


>At5g66790.1 68418.m08420 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 622

 Score = 29.9 bits (64), Expect = 6.4
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%)

Query: 299 GSSVEYSCDE--GHLLVGA-TVRTCLDTGFYDEFPPVCKR 335
           G  + ++C E  G  ++G   V+   ++  Y E PPVCKR
Sbjct: 44  GYPIRFNCSEITGEAVIGEFAVQEVTNSNIYVEIPPVCKR 83


>At5g07820.1 68418.m00896 expressed protein
          Length = 561

 Score = 29.9 bits (64), Expect = 6.4
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 502 LSSPTPFITQEPRRPKPKSTTERPTTKGYERFPEKKVTVPDSQDSATSHVP-HIIVASHP 560
           +++P P     P+R   K T   P TK    F + KV  P  +DS T+ +    IV   P
Sbjct: 395 VTNPKPESKIRPKRIGLKVTPPPPPTKQQMNFKKGKVLEPKPEDSTTTSIKFKKIVVQEP 454

Query: 561 R 561
           +
Sbjct: 455 K 455


>At3g06780.1 68416.m00805 glycine-rich protein
          Length = 201

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 232 GNDVTVSFWNAPGGGEGCAR--FDGSKGWLWADSDCQARLNYIC 273
           GND     WN  GGG G  R  +DGS    W+D   +     IC
Sbjct: 123 GNDGGGKGWNYGGGGGGFGRDNWDGSSFSSWSDPAMEFVYEVIC 166


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.134    0.438 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,999,850
Number of Sequences: 28952
Number of extensions: 800449
Number of successful extensions: 1617
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1613
Number of HSP's gapped (non-prelim): 10
length of query: 742
length of database: 12,070,560
effective HSP length: 86
effective length of query: 656
effective length of database: 9,580,688
effective search space: 6284931328
effective search space used: 6284931328
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 63 (29.5 bits)