Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002020-TA|BGIBMGA002020-PA|IPR006076|FAD dependent
oxidoreductase, IPR006222|Glycine cleavage T protein (aminomethyl
transferase), IPR013977|Glycine cleavage T-protein, C-terminal barrel
         (975 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    29   0.14 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    29   0.14 
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    25   3.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    25   3.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    25   3.9  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    25   3.9  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    24   5.2  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   9.1  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 29.5 bits (63), Expect = 0.14
 Identities = 10/29 (34%), Positives = 19/29 (65%)

Query: 926 IDIAGIRYAAKVNLHSPNLPTKYPDKERD 954
           ++ A + YA++ ++HS N+  KYP  E +
Sbjct: 320 LEFALVNYASRSDMHSDNIEKKYPPSETE 348


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 29.5 bits (63), Expect = 0.14
 Identities = 10/29 (34%), Positives = 19/29 (65%)

Query: 926 IDIAGIRYAAKVNLHSPNLPTKYPDKERD 954
           ++ A + YA++ ++HS N+  KYP  E +
Sbjct: 320 LEFALVNYASRSDMHSDNIEKKYPPSETE 348


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 760 LGYVLYIPNEFALHVYNRLMTVGEKYGISHVGYYASRALRVEKFFA 805
           L  +  IP ++   ++N+     E + I H G  A R LR+ K  +
Sbjct: 171 LDLISSIPLDYIFLIFNQFQDFSESFQILHAG-RALRILRLAKLLS 215


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 760 LGYVLYIPNEFALHVYNRLMTVGEKYGISHVGYYASRALRVEKFFA 805
           L  +  IP ++   ++N+     E + I H G  A R LR+ K  +
Sbjct: 171 LDLISSIPLDYIFLIFNQFQDFSESFQILHAG-RALRILRLAKLLS 215


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 760 LGYVLYIPNEFALHVYNRLMTVGEKYGISHVGYYASRALRVEKFFA 805
           L  +  IP ++   ++N+     E + I H G  A R LR+ K  +
Sbjct: 171 LDLISSIPLDYIFLIFNQFQDFSESFQILHAG-RALRILRLAKLLS 215


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 7/50 (14%)

Query: 517 VPGVHYG-------LPYPFYEFETGRNLRLSPIYPTLRDNGAVFGQVMGY 559
           VPG HYG       +PYP +      ++R +  Y   +D+G+    + GY
Sbjct: 61  VPGHHYGAAGSQQDMPYPRFPPYNRMDMRNATYYQHQQDHGSGMDGMGGY 110


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 19  AGVLNRRFSSRLDALDYEEKLED 41
           AG++     + LD +D E+KLED
Sbjct: 489 AGIVYHLSKAELDKMDKEKKLED 511


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 9.1
 Identities = 14/48 (29%), Positives = 20/48 (41%)

Query: 454 QMLNYHVAAGMKTVGISAAGGVAEATVDEIIDGYSKYDMHELGVNPFL 501
           QM++    A ++  GIS        T+  I+DGY        G  P L
Sbjct: 15  QMIHLIAWASLENTGISDRLENVTQTISRILDGYDIRLRPNFGGEPLL 62


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.139    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 291,844
Number of Sequences: 429
Number of extensions: 13005
Number of successful extensions: 21
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 8
length of query: 975
length of database: 140,377
effective HSP length: 64
effective length of query: 911
effective length of database: 112,921
effective search space: 102871031
effective search space used: 102871031
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 48 (23.4 bits)