GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002020-TA|BGIBMGA002020-PA|IPR006076|FAD dependent
oxidoreductase, IPR006222|Glycine cleavage T protein (aminomethyl
transferase), IPR013977|Glycine cleavage T-protein, C-terminal barrel
         (975 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    30   0.067
AY052622-1|AAL15470.1|  290|Tribolium castaneum kynurenine 3-mon...    26   1.1  
AY052393-1|AAL15467.1|  445|Tribolium castaneum kynurenine 3-mon...    26   1.1  
AY052391-1|AAL15465.1|  445|Tribolium castaneum kynurenine 3-mon...    26   1.1  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    25   1.9  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          25   1.9  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 30.3 bits (65), Expect = 0.067
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 5/84 (5%)

Query: 543  YPTLRDNGAVFGQVMGYERPT--WFETVENESEKPRPFKIAHTRTFGKPPWFDAVQREYW 600
            YP LR    V   + GY +P        +N+  KP+P  +  T T G  P    +  E  
Sbjct: 2179 YPLLRTINRV---LRGYAKPDPKCILGRDNDKTKPKPTTMKPTTTIGYEPQEPVLPAEVV 2235

Query: 601  ACRERVGLSDYSSFTKIDIQSQGR 624
             C+ R+ ++D ++  +  + +QG+
Sbjct: 2236 PCQGRLFVADDTNCAQYYLCNQGQ 2259



 Score = 23.4 bits (48), Expect = 7.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 154 SVSWSIDCDLVTPKKCHELFPML 176
           +V+W+ID D  + + C   FP+L
Sbjct: 962 AVAWTIDLDDFSNRCCGGSFPLL 984


>AY052622-1|AAL15470.1|  290|Tribolium castaneum kynurenine
          3-monooxygenase protein.
          Length = 290

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 9/22 (40%), Positives = 16/22 (72%)

Query: 52 VVICGGGVMGAAVAYHLANRGW 73
          V++ GGG++G+  A  +A RG+
Sbjct: 9  VIVVGGGLVGSLCAIFMAKRGY 30


>AY052393-1|AAL15467.1|  445|Tribolium castaneum kynurenine
          3-monooxygenase protein.
          Length = 445

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 9/22 (40%), Positives = 16/22 (72%)

Query: 52 VVICGGGVMGAAVAYHLANRGW 73
          V++ GGG++G+  A  +A RG+
Sbjct: 9  VIVVGGGLVGSLCAIFMAKRGY 30


>AY052391-1|AAL15465.1|  445|Tribolium castaneum kynurenine
          3-monooxygenase protein.
          Length = 445

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 9/22 (40%), Positives = 16/22 (72%)

Query: 52 VVICGGGVMGAAVAYHLANRGW 73
          V++ GGG++G+  A  +A RG+
Sbjct: 9  VIVVGGGLVGSLCAIFMAKRGY 30


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 14/77 (18%), Positives = 35/77 (45%), Gaps = 4/77 (5%)

Query: 546 LRDNGAVFGQVMGYERPTWFETVENESEKPRPFKIAHTRTFGKPPWFDAVQREYWACRER 605
           + DN  +  Q++ Y RP W   +     +P+ F+++ +      P    ++R   A   +
Sbjct: 31  ISDNSGINSQMIDYSRPNW-SYLRTPQFEPQQFEVSLSENRSHEP---EMERPKGASNGK 86

Query: 606 VGLSDYSSFTKIDIQSQ 622
              + Y+S   ++++ +
Sbjct: 87  RARTAYTSSQLVELERE 103


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 14/77 (18%), Positives = 35/77 (45%), Gaps = 4/77 (5%)

Query: 546 LRDNGAVFGQVMGYERPTWFETVENESEKPRPFKIAHTRTFGKPPWFDAVQREYWACRER 605
           + DN  +  Q++ Y RP W   +     +P+ F+++ +      P    ++R   A   +
Sbjct: 51  ISDNSGINSQMIDYSRPNW-SYLRTPQFEPQQFEVSLSENRSHEP---EMERPKGASNGK 106

Query: 606 VGLSDYSSFTKIDIQSQ 622
              + Y+S   ++++ +
Sbjct: 107 RARTAYTSSQLVELERE 123


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.139    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,003
Number of Sequences: 317
Number of extensions: 10549
Number of successful extensions: 26
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 7
length of query: 975
length of database: 114,650
effective HSP length: 63
effective length of query: 912
effective length of database: 94,679
effective search space: 86347248
effective search space used: 86347248
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 48 (23.4 bits)