Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002020-TA|BGIBMGA002020-PA|IPR006076|FAD dependent
oxidoreductase, IPR006222|Glycine cleavage T protein (aminomethyl
transferase), IPR013977|Glycine cleavage T-protein, C-terminal barrel
(975 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac... 63 2e-10
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|... 32 0.34
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe... 31 0.78
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb... 29 2.4
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 29 3.1
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 29 3.1
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 4.1
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 28 5.5
SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic enzyme|Schizosaccha... 28 5.5
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc... 28 7.2
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb... 27 9.6
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 9.6
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy... 27 9.6
>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 63.3 bits (147), Expect = 2e-10
Identities = 69/306 (22%), Positives = 124/306 (40%), Gaps = 23/306 (7%)
Query: 603 RERVGLSDYSSFTKIDIQSQGREVVELLQYLCSNDVDV--PVGSIIHTGMQNERGGYEND 660
RE GL D S + ++ G L+ + + + P S + + NE GG +D
Sbjct: 63 REHSGLFDVSHMVQWFVR--GENATAYLESITPSSLKELKPFHSTL-SAFTNETGGIIDD 119
Query: 661 CSLARISENHYMMIAPTIQQTRCKVWLKRHLPSNGSVTLSDVTSMYTAICVMGPFTRXXX 720
+++ EN Y ++ + + LK+H+ + V L V I + GP T
Sbjct: 120 TIISKQDENTYYIVTNAACSEKDEANLKKHIENWKGVELERVQGR-ALIAIQGPET---- 174
Query: 721 XXXXXXXXXXXNFPFFTFKEIDVGLANGIRAM--NLTHTGELGYVLYIPNEFALHVYNRL 778
+F F + G++ + +TGE G+ + IP E ++ + L
Sbjct: 175 ASVVQKLIPNVDFSVLKFGQSAYVDFKGVKCLFSRSGYTGEDGFEVSIPEEVSVDFASTL 234
Query: 779 MTVGEKYGISHVGYYASRALRVEKFFAFWGQDLDTMTTPLECGRTWRV--KFDKDIKFIG 836
+ + +G A LR+E +G D+D T+P+E +W + + K+ F+G
Sbjct: 235 LADTR---VRPIGLGARDTLRLEAGMCLYGSDIDDTTSPVEGSLSWIIGKRRRKEGGFVG 291
Query: 837 RDALLKQREDGIRRQYVQXXXXXXXXXXXXWSWGGEPIYRDGNYCGQTTTTSYGFTFKKQ 896
+LK+ +DG R+ V G + DG GQ T+ T K
Sbjct: 292 SSRILKELKDGPSRRRVGFIVEKVPARH------GSAVEVDGVEVGQVTSGCPSPTLGKN 345
Query: 897 VCLGFV 902
+ +G++
Sbjct: 346 IAMGYI 351
>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 348
Score = 32.3 bits (70), Expect = 0.34
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 4/79 (5%)
Query: 233 ETTNGAIECDYFINCAGFWARQVGQLARPQVKVPLLPCEHYYLHTKPIDNLDPMTPVIRD 292
ET E NC G WA ++G + P V P + + K + ++
Sbjct: 173 ETVEETPEASVVFNCTGLWASKLGGVEDPDV----YPTRGHVVLVKAPHVTETRILNGKN 228
Query: 293 PDGYIYLRERDGCILAGGF 311
D YI R +G ++ GGF
Sbjct: 229 SDTYIIPRPLNGGVICGGF 247
>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 31.1 bits (67), Expect = 0.78
Identities = 50/209 (23%), Positives = 87/209 (41%), Gaps = 16/209 (7%)
Query: 52 VVICGGGVMGAAVAYHLANRGWGDRTVVVEKEK--VGAGSRWHSSGLVGAFKPTLAQVRL 109
V+I G GV G + A L RG G ++++ V GS ++ ++ + A
Sbjct: 7 VIIVGAGVFGLSAALELTKRG-GYTIKILDRAPPPVIDGSSVDANRII---RSDYADAVY 62
Query: 110 AQSSIRLLKELEARGRPTGWKQC-GSLLLARTRDRMTVYRRMKSQSVS-WSIDC-DLVTP 166
I L+E R P +Q GS L+ RD + YR M ++++ + T
Sbjct: 63 CSMGIDALEEW--RTNPLFKEQFYGSGLMFVGRDNVE-YRDMSLENLTKMGVSAAKFQTT 119
Query: 167 KKCHELFPML--NVEDVLGGLWIPGDGVGDPHLLCMSLMREATDKGVGVME--DCSVTAV 222
++ +LFP + D G G + S++ GV + + +V +
Sbjct: 120 EELRKLFPKWIGELNDGEAGYANFSSGWANAEQSVKSVVNYLAHAGVSFISGPEGTVEEL 179
Query: 223 LSKDDKVSGVETTNGAIECDYFINCAGFW 251
+++++ V GV TT GA + I G W
Sbjct: 180 ITEENVVKGVRTTTGAYMAEKLIFATGAW 208
>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 440
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 892 TFKKQVCLGFVEKRDKDGVTQKVDNDYVLSGHYEIDI 928
+ +KQV + F + ++ V V NDYVLSG + + +
Sbjct: 243 SIEKQVAIHFQQSKEGYEVVHVVFNDYVLSGGWTVSL 279
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 29.1 bits (62), Expect = 3.1
Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 411 PPRGVSTNEINHKNPEEISDTLVSNSRSVKVVIFPISLS---ERRFQMLNYHVAAGMKTV 467
PP+ +++ ++ N S T VS S ++ +FP S+S ++ F N ++ G++ +
Sbjct: 1622 PPQPGNSSGMSAMNTNTTSTTPVSLSELSEITLFPSSVSPTWKKSFGNANTNLKYGLEDM 1681
Query: 468 GISAAGGVAEATVDEIIDGYSKYDMHEL 495
+S G + T DE ++ + H++
Sbjct: 1682 SLSHRRG-HKRTYDEHLNNVQQGVNHDM 1708
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 29.1 bits (62), Expect = 3.1
Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 411 PPRGVSTNEINHKNPEEISDTLVSNSRSVKVVIFPISLS---ERRFQMLNYHVAAGMKTV 467
PP+ +++ ++ N S T VS S ++ +FP S+S ++ F N ++ G++ +
Sbjct: 1622 PPQPGNSSGMSAMNTNTTSTTPVSLSELSEITLFPSSVSPTWKKSFGNANTNLKYGLEDM 1681
Query: 468 GISAAGGVAEATVDEIIDGYSKYDMHEL 495
+S G + T DE ++ + H++
Sbjct: 1682 SLSHRRG-HKRTYDEHLNNVQQGVNHDM 1708
>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 391
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 410 RPPRGVSTNEINHKNPEEISDTLVSNSRSVK 440
+PPR T IN ++ +E D+L++N + V+
Sbjct: 252 KPPRKRITLSINQQDKDEFFDSLINNKKEVR 282
>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 317
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 261 PQVKVPLLPCEHYYLHTKPID 281
P++ VPLLP E+++LH+ +D
Sbjct: 220 PRIAVPLLPHEYHHLHSLLLD 240
>SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic
enzyme|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/52 (25%), Positives = 22/52 (42%)
Query: 48 SKAKVVICGGGVMGAAVAYHLANRGWGDRTVVVEKEKVGAGSRWHSSGLVGA 99
+++ +VI G G G AY++ R + ++E G W L A
Sbjct: 75 AESDIVIVGAGSAGLTAAYYIGTRRPDLKIAIIEASVAPGGGAWLGGQLFSA 126
>SPAC1F5.07c |hem14||protoporphyrinogen
oxidase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 490
Score = 27.9 bits (59), Expect = 7.2
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 52 VVICGGGVMGAAVAYHLA 69
+ ICGGG+ G + A++LA
Sbjct: 3 IAICGGGIAGLSTAFYLA 20
>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 27.5 bits (58), Expect = 9.6
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 390 YSTSDSIVSVHLLRRLRMGFRPPRGVSTNEINHKNPEEISDTLVSN---SRSVK-VVIFP 445
+ S+ I L L + P G+ ++N KNP ++ + V SRS++ + I
Sbjct: 92 FDESNIITPSKYLFPLSKDYSPNEGLFQTDMNEKNPHDLWNPTVPMAYLSRSLQGLTISK 151
Query: 446 ISLSERRFQMLNYH 459
I+ +E++F + + H
Sbjct: 152 INETEQKFPLSSVH 165
>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/71 (21%), Positives = 31/71 (43%)
Query: 904 KRDKDGVTQKVDNDYVLSGHYEIDIAGIRYAAKVNLHSPNLPTKYPDKERDVYQATRKLH 963
+ DK+ K + + L GH+E+D + N +S PT + + + + +
Sbjct: 279 ENDKEPAELKAKDAFQLKGHHELDAPYHKKVFDTNQYSDLKPTNFMSQIHRLAKVQERKE 338
Query: 964 EPQQFLGRHYQ 974
E ++ G+ Q
Sbjct: 339 EEERKKGKDGQ 349
>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/63 (23%), Positives = 27/63 (42%)
Query: 126 PTGWKQCGSLLLARTRDRMTVYRRMKSQSVSWSIDCDLVTPKKCHELFPMLNVEDVLGGL 185
P+G +LL + D++T++ R S W+ L P+L E ++G
Sbjct: 16 PSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPA 75
Query: 186 WIP 188
+P
Sbjct: 76 ALP 78
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.321 0.139 0.435
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,599,699
Number of Sequences: 5004
Number of extensions: 201606
Number of successful extensions: 412
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 396
Number of HSP's gapped (non-prelim): 15
length of query: 975
length of database: 2,362,478
effective HSP length: 80
effective length of query: 895
effective length of database: 1,962,158
effective search space: 1756131410
effective search space used: 1756131410
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)
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