Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002020-TA|BGIBMGA002020-PA|IPR006076|FAD dependent
oxidoreductase, IPR006222|Glycine cleavage T protein (aminomethyl
transferase), IPR013977|Glycine cleavage T-protein, C-terminal barrel
(975 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1207 + 31734940-31735500,31736565-31736683,31736791-317373... 70 1e-11
09_04_0719 + 19716536-19716857,19716949-19717101,19717493-197177... 44 4e-04
11_06_0148 + 20631949-20632338,20632838-20633044,20633168-206332... 36 0.21
08_01_0072 - 513561-513926,514055-514189,514274-514417,514505-51... 34 0.64
03_06_0609 - 35042276-35042388,35042476-35042527,35042624-350427... 32 1.9
02_01_0327 - 2241228-2242509,2243227-2243247,2243299-2243614,224... 32 1.9
05_03_0104 - 8426374-8426542,8426656-8426828,8427020-8427103,842... 32 2.6
09_06_0182 - 21397221-21397575,21397712-21398076,21398510-213986... 31 3.4
04_04_1299 + 32450998-32451134,32451575-32452304,32452856-324530... 31 3.4
03_05_0501 - 24944533-24945507 31 4.5
12_02_1111 - 26157796-26160330 31 5.9
04_01_0098 - 1008936-1011185,1011383-1012271,1012336-1013420 30 7.8
>04_04_1207 +
31734940-31735500,31736565-31736683,31736791-31737318,
31738256-31738354,31739768-31739909
Length = 482
Score = 69.7 bits (163), Expect = 1e-11
Identities = 69/319 (21%), Positives = 128/319 (40%), Gaps = 21/319 (6%)
Query: 593 DAVQREYWACRERVGLSDYSSFTKIDIQSQGREVVELLQYLCSNDVD-VPVGSIIHTGMQ 651
D + CR L D S + + GR+ + L+ L DV + G+ T
Sbjct: 66 DTIMDSTLNCRANGSLFDVSHMCGLSLH--GRQAIPFLESLVVADVAALKDGTGTLTVFT 123
Query: 652 NERGGYENDCSLARISENHYMMIAPTIQQTRCKVWLKRHLPS---NGSVTLSDVTSMYTA 708
N+RGG +D + ++++ H ++ + + + H+ + G V +
Sbjct: 124 NDRGGAIDDSVVTKVTDQHIYLVVNAGCRDKDLAHIGEHMEAFNKKGGDVKWHVHDERSL 183
Query: 709 ICVMGPFTRXXXXXXXXXXXXXXNFPFFTFKEIDVGLANGIRAM--NLTHTGELGYVLYI 766
+ + GP F FK ID+ NG +TGE G+ + +
Sbjct: 184 LALQGPLA--APTLQLLTKEDLSKMYFSDFKMIDI---NGYACFLTRTGYTGEDGFEISV 238
Query: 767 PNEFALHVYNRLMTVGEKYGISHVGYYASRALRVEKFFAFWGQDLDTMTTPLECGRTWRV 826
P+E A+ + L+ E + G A +LR+E +G D++ TP+E G +W +
Sbjct: 239 PSENAVDLAKALLEKSEGK-VRLTGLGARDSLRLEAGLCLYGNDMEQHITPVEAGLSWAI 297
Query: 827 KFDKDIK--FIGRDALLKQREDGIRRQYVQXXXXXXXXXXXXWSWGGEPIYRDGNYCGQT 884
+ + F+G D +LKQ ++G + + V E + G G+
Sbjct: 298 GKRRKAEGGFLGADVILKQLQEGPKIRRVGLLSQGPPPRSH-----SEIVSNSGENIGEV 352
Query: 885 TTTSYGFTFKKQVCLGFVE 903
T+ + KK + +G+V+
Sbjct: 353 TSGGFSPCLKKNIAMGYVK 371
>09_04_0719 +
19716536-19716857,19716949-19717101,19717493-19717707,
19717785-19717855,19717998-19718157,19718598-19718790,
19718936-19719091,19719229-19719317,19719602-19719695,
19719870-19720039
Length = 540
Score = 44.4 bits (100), Expect = 4e-04
Identities = 65/255 (25%), Positives = 110/255 (43%), Gaps = 26/255 (10%)
Query: 52 VVICGGGVMGAAVAYHLA-----NRGWGDRTV-VVEKEKVGAGSRWHSSGLVGAFKPTLA 105
VV+ G G++G ++A HL + D V G G W S G+ LA
Sbjct: 68 VVVVGAGIIGLSIARHLLLHTPLSVAVADAAVPCTGATGAGQGYLWMSHRTPGSDTWELA 127
Query: 106 QVRLAQSSIRLLKELEARG-----RPTGWKQCGSLLLARTRDRM-TVYRRMKSQSVSWSI 159
VR Q L E++ G GW + GSLL+ RT + M T+ R K+ S + I
Sbjct: 128 -VRSKQLWEELAAEVDGLGGGGARERLGWMRTGSLLVGRTSEEMATLEERTKALSQA-GI 185
Query: 160 DCDLVTPKKCHELFPMLNVEDVLGGLWIPGDGVGDPHLLCMSLMREA----TDKG--VGV 213
+ ++ H L P L V G +++P D D +SL+ + + +G + +
Sbjct: 186 RAECLSAASLHALEPELYVGHDGGAMFLPEDCQIDA-FQAVSLIEKTNGSYSSEGRYMEI 244
Query: 214 MEDCSVTAVLSK-DDKVSGVETTNGAI-ECDYFINCAGFWARQVGQL---ARPQVKVPLL 268
D +++ V S+ V GV+T+ + + +G W R + + P + +P++
Sbjct: 245 YNDPAMSLVRSETTGTVQGVQTSKHILYGRKAIVIASGAWTRTLLRSFLEPNPTLDIPVM 304
Query: 269 PCEHYYLHTKPIDNL 283
P + + L D L
Sbjct: 305 PRKGHLLVLDKFDKL 319
>11_06_0148 +
20631949-20632338,20632838-20633044,20633168-20633267,
20633478-20633560,20633656-20633712,20633790-20633942,
20634016-20634094,20634279-20634427,20634541-20634675,
20634783-20634896,20635065-20635175,20635338-20635373,
20635675-20635884
Length = 607
Score = 35.5 bits (78), Expect = 0.21
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 150 MKSQSVSWSIDCDLVTPKKCHEL-FPMLNVEDVL-----GGLWIPGDGVGDPHLLCMSLM 203
+K Q + ID + + L PM+N VL GG+ P GVG + MSL
Sbjct: 248 IKDQQLLSFIDAECFIVSTVNALQTPMINASMVLCDRHFGGINYPVGGVGG---IAMSLA 304
Query: 204 REATDKGVGVMEDCSVTAVLSKDDKVSGVETTNG 237
DKG + +VT V+ ++ K GV +NG
Sbjct: 305 DGLVDKGSEIRYKANVTNVILENGKAVGVRLSNG 338
>08_01_0072 -
513561-513926,514055-514189,514274-514417,514505-514744,
516325-516636
Length = 398
Score = 33.9 bits (74), Expect = 0.64
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 19 AGVLNRRFSSRLDALDYEEKLEDCLSVLPSKAKVVICGGGVMGAAVAYHL 68
+G+ N +S DY + L D L+ LP KV++ G GA+V+Y L
Sbjct: 152 SGIDNADTNSIATLADYSKPLIDYLNKLPENEKVILVGHSCGGASVSYAL 201
>03_06_0609 -
35042276-35042388,35042476-35042527,35042624-35042725,
35043546-35043745,35045258-35045336,35045541-35045595,
35045947-35046122,35046386-35046988,35047077-35047265,
35048150-35048201,35048289-35048356,35048873-35048911,
35048912-35048970,35049639-35049782,35050136-35050238,
35050368-35050467,35050596-35050612
Length = 716
Score = 32.3 bits (70), Expect = 1.9
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 34 DYEEKLEDCLSVLPSKAKVVICGGGVMGAAVAYHLAN 70
D+ EK++D + P + + I GGG++G AVA L+N
Sbjct: 40 DHTEKVDD-VKARPDELDIAIVGGGMVGLAVACALSN 75
>02_01_0327 -
2241228-2242509,2243227-2243247,2243299-2243614,
2244232-2244496,2245887-2245985
Length = 660
Score = 32.3 bits (70), Expect = 1.9
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 95 GLVGAFKPTLAQVRLAQSSIRLLKELEARGRPTG--WKQCGSLLLARTRDRM 144
G A +P LA V A +L + EA RP G W +CG+++L +D++
Sbjct: 277 GSAAADRPRLAPVAAAMVDAQLPRAGEAIYRPQGHGWGRCGAMILGGGKDKV 328
>05_03_0104 -
8426374-8426542,8426656-8426828,8427020-8427103,
8427110-8427205,8427530-8427616,8428639-8428767,
8428922-8429098,8429185-8429295,8429642-8429761,
8430767-8432427,8432485-8432867,8433707-8434470,
8434532-8434813,8436158-8436493
Length = 1523
Score = 31.9 bits (69), Expect = 2.6
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 85 VGA-GSRWHSSGLVGAFKPT-LAQVRLAQSSIRLLKELEARGRPTGWKQCGSLLLARTRD 142
VGA GSR G G +P+ + + ++Q S + L+ G G + C SLLL R
Sbjct: 95 VGAVGSRHDDGGGSGVVRPSGVTSIPVSQKSTNPFQGLDLAGERQGQQSCASLLLQAKRR 154
Query: 143 R 143
R
Sbjct: 155 R 155
>09_06_0182 -
21397221-21397575,21397712-21398076,21398510-21398685,
21398802-21399039,21399627-21400118
Length = 541
Score = 31.5 bits (68), Expect = 3.4
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 49 KAKVVICGGGVMGAAVAYHLANRGWGDRTVVVEKEKVGA-GSRW 91
K +V I G GV G A H RG+ R VV E + GA G W
Sbjct: 5 KKRVAIVGAGVSGLAACKHALERGF--RPVVFEADGAGAVGGVW 46
>04_04_1299 +
32450998-32451134,32451575-32452304,32452856-32453053,
32453398-32454065,32454555-32454978,32455917-32456009,
32456101-32456295,32456378-32456470,32456718-32456930,
32457015-32457104,32457239-32457400
Length = 1000
Score = 31.5 bits (68), Expect = 3.4
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 575 PRPFKIAHTRTFGKPPWFDAVQREYWACRERVGLSDYSSF-----TKIDIQSQGREVVEL 629
P PF+ R G+ P+ +++Y +G++D S+F T ++QS +E +E
Sbjct: 26 PSPFRCCGGRR-GRSPFIGGGRQDYSHSSSGLGVTDNSAFKIGVYTNFNVQSNAQEWLEE 84
Query: 630 LQYLCSNDVDVPVGSIIHTGMQNERGG 656
+ + S VG+ I+ G + R G
Sbjct: 85 SKRISSIKTRNNVGNTIYKGSTHLRTG 111
>03_05_0501 - 24944533-24945507
Length = 324
Score = 31.1 bits (67), Expect = 4.5
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 292 DPDGYIYLRERDGCILAGGFEPIAKPVYEEEIENASQRCLP 332
D DG+ L E +GC +AGG + V E+ +E RC P
Sbjct: 132 DNDGFFLLDEEEGCGVAGG---VGFGVDEDPLEGFETRCPP 169
>12_02_1111 - 26157796-26160330
Length = 844
Score = 30.7 bits (66), Expect = 5.9
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 539 LSPIYPTLRDNGAVFGQVMGYERPTWFETVENESEKPRP 577
++P+ TLR A G V G++ P F T EN P P
Sbjct: 209 VAPVETTLRPKNAGLGSVEGFKEPKPFFTKENLPPPPPP 247
>04_01_0098 - 1008936-1011185,1011383-1012271,1012336-1013420
Length = 1407
Score = 30.3 bits (65), Expect = 7.8
Identities = 18/65 (27%), Positives = 28/65 (43%)
Query: 57 GGVMGAAVAYHLANRGWGDRTVVVEKEKVGAGSRWHSSGLVGAFKPTLAQVRLAQSSIRL 116
GG A L +R + V+ GAG+ H SG++G F L+ +S + +
Sbjct: 868 GGAGAAVSTERLGHRAKSESGVIFPSSHRGAGTSRHVSGMIGRFSQFLSLDAGGESLLSV 927
Query: 117 LKELE 121
E E
Sbjct: 928 GSEFE 932
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.139 0.435
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,091,194
Number of Sequences: 37544
Number of extensions: 1352007
Number of successful extensions: 2526
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2514
Number of HSP's gapped (non-prelim): 16
length of query: 975
length of database: 14,793,348
effective HSP length: 89
effective length of query: 886
effective length of database: 11,451,932
effective search space: 10146411752
effective search space used: 10146411752
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 65 (30.3 bits)
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