GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002020-TA|BGIBMGA002020-PA|IPR006076|FAD dependent
oxidoreductase, IPR006222|Glycine cleavage T protein (aminomethyl
transferase), IPR013977|Glycine cleavage T-protein, C-terminal barrel
         (975 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY545988-1|AAS99341.1|  423|Anopheles gambiae carboxypeptidase B...    28   1.4  
AJ627286-1|CAF28572.1|  423|Anopheles gambiae carboxypeptidase B...    28   1.4  
AF515524-1|AAM61891.1|  218|Anopheles gambiae glutathione S-tran...    25   7.3  
AY341205-1|AAR13769.1|  285|Anopheles gambiae period protein.          25   9.6  
AY341204-1|AAR13768.1|  285|Anopheles gambiae period protein.          25   9.6  
AY341203-1|AAR13767.1|  285|Anopheles gambiae period protein.          25   9.6  
AY341202-1|AAR13766.1|  285|Anopheles gambiae period protein.          25   9.6  

>AY545988-1|AAS99341.1|  423|Anopheles gambiae carboxypeptidase B
           precursor protein.
          Length = 423

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/33 (30%), Positives = 19/33 (57%)

Query: 271 EHYYLHTKPIDNLDPMTPVIRDPDGYIYLRERD 303
           EH   + + + N D +   + +PDGY+Y  E++
Sbjct: 206 EHSDQYAEQLSNTDYVIVPVANPDGYVYTHEQN 238


>AJ627286-1|CAF28572.1|  423|Anopheles gambiae carboxypeptidase B
           protein.
          Length = 423

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/33 (30%), Positives = 19/33 (57%)

Query: 271 EHYYLHTKPIDNLDPMTPVIRDPDGYIYLRERD 303
           EH   + + + N D +   + +PDGY+Y  E++
Sbjct: 206 EHSDQYAEQLSNTDYVIVPVANPDGYVYTHEQN 238


>AF515524-1|AAM61891.1|  218|Anopheles gambiae glutathione
           S-transferase u3 protein.
          Length = 218

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/30 (30%), Positives = 16/30 (53%)

Query: 348 RVPGLNQAVLHKLCNGLEAFSPDCKWIVGE 377
           R+P   +  ++K    L+++   C WI GE
Sbjct: 125 RIPQEKKDAVYKALEKLDSYLDGCDWIAGE 154


>AY341205-1|AAR13769.1|  285|Anopheles gambiae period protein.
          Length = 285

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 56  GGGVMGAAVAYHLANRGWGDRTVVVEKEKVGAGSRWHSSGLVGAFK-PTLAQVRLAQ 111
           GGG  G+A  +   +    D T        G G    SSG  G+F+ PTL +  L +
Sbjct: 223 GGGSGGSAGNFSSESNAQMDSTTNTTSNTGGTGGTGTSSGGGGSFQPPTLTEELLCK 279


>AY341204-1|AAR13768.1|  285|Anopheles gambiae period protein.
          Length = 285

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 56  GGGVMGAAVAYHLANRGWGDRTVVVEKEKVGAGSRWHSSGLVGAFK-PTLAQVRLAQ 111
           GGG  G+A  +   +    D T        G G    SSG  G+F+ PTL +  L +
Sbjct: 223 GGGSGGSAGNFSSESNAQMDSTTNTTSNTGGTGGTGTSSGGGGSFQPPTLTEELLCK 279


>AY341203-1|AAR13767.1|  285|Anopheles gambiae period protein.
          Length = 285

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 56  GGGVMGAAVAYHLANRGWGDRTVVVEKEKVGAGSRWHSSGLVGAFK-PTLAQVRLAQ 111
           GGG  G+A  +   +    D T        G G    SSG  G+F+ PTL +  L +
Sbjct: 223 GGGSGGSAGNFSSESNAQMDSTTNTTSNTGGTGGTGTSSGGGGSFQPPTLTEELLCK 279


>AY341202-1|AAR13766.1|  285|Anopheles gambiae period protein.
          Length = 285

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 56  GGGVMGAAVAYHLANRGWGDRTVVVEKEKVGAGSRWHSSGLVGAFK-PTLAQVRLAQ 111
           GGG  G+A  +   +    D T        G G    SSG  G+F+ PTL +  L +
Sbjct: 223 GGGSGGSAGNFSSESNAQMDSTTNTTSNTGGTGGTGTSSGGGGSFQPPTLTEELLCK 279


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.321    0.139    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,062,475
Number of Sequences: 2123
Number of extensions: 47013
Number of successful extensions: 66
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 63
Number of HSP's gapped (non-prelim): 7
length of query: 975
length of database: 516,269
effective HSP length: 71
effective length of query: 904
effective length of database: 365,536
effective search space: 330444544
effective search space used: 330444544
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)