Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002019-TA|BGIBMGA002019-PA|IPR002893|Zinc finger,
MYND-type, IPR000770|SAND, IPR010919|SAND-like
(460 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo... 43 8e-05
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 39 0.001
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 33 0.11
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz... 32 0.19
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 31 0.34
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch... 28 2.4
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 4.2
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 5.5
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 27 5.5
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 26 9.6
>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 43.2 bits (97), Expect = 8e-05
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 398 CANCNREA--SAECSLCRRTPYCSTYCQKKDWASHQIEC 434
C+ C E + C+ C+ YCS CQK DW H++EC
Sbjct: 49 CSTCTEEKVKTQRCAACKIIHYCSKGCQKADWPFHKLEC 87
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 39.1 bits (87), Expect = 0.001
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
Query: 397 QCAN--CNR--EAS---AECSLCRRTPYCSTYCQKKDWASHQIEC 434
+CAN CN+ E S A+C CRRT YCS CQ + W H C
Sbjct: 479 RCANLLCNKWEEHSRQFAKCRRCRRTKYCSKECQHQAWPGHSRWC 523
>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 32.7 bits (71), Expect = 0.11
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 374 VDDQVDPEQVLLHNVEDTESKKVQ-CANCNREASAECSLCRRTPYCSTYCQKKDWASHQI 432
V+D++D V+ + E S + C NCN C P +C+K A H++
Sbjct: 189 VEDELDGRCVICNEAECENSNAIVFCDNCNTSVHQNCYGIPFVPEGQWFCKKCLLAPHEV 248
Query: 433 ECLRSVP 439
C P
Sbjct: 249 ICCAFCP 255
>SPAC1039.04 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 31.9 bits (69), Expect = 0.19
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 38 TSVLSTTIKNTRLSNDSNGVVTVPVSLPVGTLIAGTTFNVITSDHLPHFKPMICVDNGF 96
+SVL++T N N+S V V +P+ ++ + N+ P + P + + GF
Sbjct: 396 SSVLTSTWYNNNTPNESRRAVFTSVGVPLANVMGLVSANIFRPQDAPKYVPALGITAGF 454
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 31.1 bits (67), Expect = 0.34
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 329 LDDISETLVRLSTELKQCVEDVRRVSARQLERLEQ-ERTSALLAASVDDQVDPEQVLLHN 387
LDDI ++L + + +E+ ++ A LE++ Q +L +D ++ E L+++
Sbjct: 498 LDDIRKSLQGKTEGISNAIEEKQKAMAPALEKINQLTSEKQILQVELDMLLNKENDLIND 557
Query: 388 VEDTES 393
VE ++S
Sbjct: 558 VESSQS 563
>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
oxidase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 28.3 bits (60), Expect = 2.4
Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 141 SWTETANMPVLPVRCKNTSAELHKNKFGSGGRGRCIKYGIEWYTPSEFEALCGRASSKD- 199
+W +T + L +RC T +L + + G+ I+ ++PS+ G S D
Sbjct: 19 NWAKTFSAISLGLRCPKTEEQLREILVDANSNGKKIRVVGAGHSPSDIVCTSGYLLSLDK 78
Query: 200 WKRSIRFGGRSIQALIDEGI 219
+ + F S+ + GI
Sbjct: 79 MNKVVSFDPDSLSITVQAGI 98
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.5 bits (58), Expect = 4.2
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 11 VMPDITEVSEADPLSTATEHDNERV--EGTSVLSTTIKNTRLSNDSNGVVTVPVSLPVGT 68
V+ T ++ + L+T+T + V T + S+T+ NT S+ VV S P+ +
Sbjct: 857 VLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVN--SSTPITS 914
Query: 69 LIAGTTFNVITSDHLPHFKPMICVDNGFISGGPVS 103
A T ITS + + I G + P++
Sbjct: 915 STALNTSTPITSSSVLNSSTPITSSTGLNTSTPIT 949
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 27.1 bits (57), Expect = 5.5
Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 9/120 (7%)
Query: 279 QSSENSHSKEAWQSI-AEGLETTTDYQILGNPEIKTDPPPNVPDMSAVLKRLDDISETLV 337
Q EN+ A + AEG E +T +PE + N D S K E L
Sbjct: 57 QVVENTEDISASNVVSAEGAEASTGDASTQSPETSENVVKNSVDESVAEK---PEKEDLA 113
Query: 338 RLSTELKQCVEDVRRVSARQLERLEQERTSALLAASVDDQVDPEQVLLHNVEDTESKKVQ 397
+ +E K D + +E E TS ++ D+++ + LH++ + + KK++
Sbjct: 114 VIESEDKAAKPD-----GEIKKNVETEVTSRSTSSQEKDELEKQVKTLHDLNEQKDKKIK 168
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 139 ARSWTETANMPVLPVRCKNTS 159
A+SW TA+ P+LP KN S
Sbjct: 290 AKSWNHTASAPLLPPGLKNGS 310
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 26.2 bits (55), Expect = 9.6
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 349 DVRRVSARQLE--RLEQERTSALLAASVDDQVDPEQVLLHNVEDTESKKVQCANCNREAS 406
+ +R+S+ Q E RL E+ ++ ++ + + + + E+KKVQCA + +
Sbjct: 839 ETQRLSSLQTELSRLRDEKRNS--EVDIERHRQTVESCTNILREKEAKKVQCAQVVADYT 896
Query: 407 AECSL-CRRTP 416
A+ + C R P
Sbjct: 897 AKANTRCERVP 907
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.128 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,992,691
Number of Sequences: 5004
Number of extensions: 78009
Number of successful extensions: 171
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 162
Number of HSP's gapped (non-prelim): 14
length of query: 460
length of database: 2,362,478
effective HSP length: 75
effective length of query: 385
effective length of database: 1,987,178
effective search space: 765063530
effective search space used: 765063530
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 55 (26.2 bits)
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