Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002019-TA|BGIBMGA002019-PA|IPR002893|Zinc finger,
MYND-type, IPR000770|SAND, IPR010919|SAND-like
(460 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0841 - 28104977-28105142,28105439-28105502,28105586-281056... 47 4e-05
06_03_0968 - 26402154-26403834,26404322-26404383,26404473-264046... 44 3e-04
08_02_1014 - 23586552-23587224,23587402-23587463,23587735-235879... 38 0.017
02_02_0236 + 8135641-8135795,8136167-8136557,8136640-8136931,813... 37 0.039
08_02_0546 - 18474217-18475133,18475207-18475396,18475870-184763... 35 0.16
12_02_0884 - 23986393-23987486,23988213-23988314,23988561-239886... 34 0.27
01_06_1840 - 40250285-40251022,40251121-40251283,40251523-40251731 33 0.36
07_03_0378 + 17446311-17446514,17446814-17446927,17447124-174472... 32 0.83
01_05_0451 - 22361617-22361811,22362728-22362842,22363443-223635... 32 0.83
04_03_0710 - 18916593-18917372,18917467-18917629,18917715-18917959 31 1.9
03_01_0465 + 3598815-3598972,3599949-3600711,3601073-3601159,360... 31 1.9
09_02_0573 - 10804171-10805096,10805188-10805377,10805920-108063... 31 2.5
07_03_0963 + 22949898-22949985,22950295-22950364,22951204-229512... 31 2.5
05_04_0126 + 18252594-18256922 30 3.4
03_02_0701 - 10523053-10523220,10523802-10523916,10524102-105241... 30 4.4
01_06_1193 - 35306608-35306777,35306869-35306890,35306988-353069... 30 4.4
05_05_0305 - 23970692-23970825,23972323-23973703 29 5.9
02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942 29 5.9
03_01_0611 + 4493618-4493641,4494705-4494730,4495758-4497471,449... 29 7.8
03_01_0097 + 771994-772674 29 7.8
>03_05_0841 -
28104977-28105142,28105439-28105502,28105586-28105655,
28105743-28105852,28106217-28106295,28106610-28106691,
28106791-28106879,28107351-28107425,28107728-28107862,
28108018-28108163,28108380-28108491
Length = 375
Score = 46.8 bits (106), Expect = 4e-05
Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 398 CANCNREASA-ECSLCRRTPYCSTYCQKKDWASHQIECLRSVPAIHTDAQQ 447
C NC + +CS+CR YC + CQ+++W HQ+EC R++ A+ D ++
Sbjct: 60 CDNCFASRNLRKCSVCRVAWYCGSACQREEWKLHQLEC-RAIAALTEDRKK 109
>06_03_0968 -
26402154-26403834,26404322-26404383,26404473-26404682,
26404776-26404860,26405461-26405618,26405745-26405868,
26405955-26406123,26406202-26406287,26406379-26406467,
26406564-26406735,26407820-26408193
Length = 1069
Score = 44.0 bits (99), Expect = 3e-04
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 398 CANCNREASAECSLCRRTPYCSTYCQKKDWAS-HQIEC 434
CA C A+ +CS C+R YCS CQ K W S H+ +C
Sbjct: 105 CAACGYIATKKCSGCKRVRYCSQGCQSKHWQSGHKFKC 142
>08_02_1014 -
23586552-23587224,23587402-23587463,23587735-23587950,
23588125-23588209,23589232-23589389,23589505-23589625,
23590081-23590243,23590330-23590415,23590660-23590742,
23590816-23591677,23593266-23593693
Length = 978
Score = 37.9 bits (84), Expect = 0.017
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Query: 368 ALLAASVDDQVDPEQVLLHNVEDTESKKVQCANCNREASAECSLCRRTPYCSTYCQKKDW 427
A++ A + + + E + K CA C R + C C+ YCS CQ W
Sbjct: 93 AVVPAQAEAEAEMEARAQPQPQPPVGAKGVCAVCFRPTTFRCKQCKAVKYCSFKCQIAHW 152
Query: 428 -ASHQIECL-RSVPAIHTDAQQ 447
H+ EC S A H D +
Sbjct: 153 RQGHKNECRPPSTDANHDDVAE 174
>02_02_0236 +
8135641-8135795,8136167-8136557,8136640-8136931,
8137117-8137271,8137363-8137451,8137623-8137967,
8139046-8139169,8139424-8139581,8139673-8139757,
8140094-8140306,8141314-8141375,8141466-8141951,
8142472-8142568
Length = 883
Score = 36.7 bits (81), Expect = 0.039
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 397 QCANCNREASAECSLCRRTPYCSTYCQKKDW-ASHQIEC 434
+CA C+ A CS C+ YCS CQ W H+ C
Sbjct: 31 ECATCHGPAKTRCSRCKSVRYCSGKCQIIHWRQGHKQTC 69
>08_02_0546 -
18474217-18475133,18475207-18475396,18475870-18476313,
18476629-18477495,18478858-18479367
Length = 975
Score = 34.7 bits (76), Expect = 0.16
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Query: 290 WQSIAEGLETTTDYQILGNPEIK---TDPPPNVPDMSAVLKRLDDISETLVRLSTELKQC 346
W +A + T + GN EIK PD + VLK D + + LV ++ E
Sbjct: 502 WHPLATSVAVATLHSCFGN-EIKQFIAGLTDLTPDAAQVLKAADKLEKDLVNIAVEDSVN 560
Query: 347 VEDVRRVSARQLERLEQERTSA-LLAASVDDQVD 379
++D ++ R++ E E A L+ A V ++VD
Sbjct: 561 IDDDGKLLIREMLPYEAENVMANLVKAWVKERVD 594
>12_02_0884 -
23986393-23987486,23988213-23988314,23988561-23988642,
23989231-23989368
Length = 471
Score = 33.9 bits (74), Expect = 0.27
Identities = 20/82 (24%), Positives = 34/82 (41%)
Query: 330 DDISETLVRLSTELKQCVEDVRRVSARQLERLEQERTSALLAASVDDQVDPEQVLLHNVE 389
D + + +V S + K+ R+ A LE +E LL+ D E L ++E
Sbjct: 224 DSMQDVMVFSSVKRKRSFRSKRQTPALSLEEIEAADALLLLSGCFDKTSAYEDCYLGDIE 283
Query: 390 DTESKKVQCANCNREASAECSL 411
D+ + + N A CS+
Sbjct: 284 DSSLRSIVLTEVNMNAVDRCSV 305
>01_06_1840 - 40250285-40251022,40251121-40251283,40251523-40251731
Length = 369
Score = 33.5 bits (73), Expect = 0.36
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 403 REASAECSLCRRTPYCSTYCQKKDW-ASHQIECL 435
R CS+C YCS CQ DW +H+ +C+
Sbjct: 323 RHEFRRCSVCGAANYCSRACQALDWKRAHKAQCV 356
>07_03_0378 +
17446311-17446514,17446814-17446927,17447124-17447242,
17447595-17447641,17447720-17447820,17450769-17450840,
17451290-17451403,17451495-17451500,17451501-17451611
Length = 295
Score = 32.3 bits (70), Expect = 0.83
Identities = 14/36 (38%), Positives = 15/36 (41%)
Query: 401 CNREASAECSLCRRTPYCSTYCQKKDWASHQIECLR 436
C EA C C YCS Q W H+ EC R
Sbjct: 46 CAGEARRRCGGCGAVAYCSRAHQTVHWGFHKEECAR 81
>01_05_0451 -
22361617-22361811,22362728-22362842,22363443-22363513,
22363600-22363754,22363843-22363933,22364049-22364104,
22364910-22365027,22365087-22365200,22365289-22365504
Length = 376
Score = 32.3 bits (70), Expect = 0.83
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 402 NREASAECSLCRRTPYCSTYCQKKDW-ASHQIEC 434
+R CS CR++ YCS Q+ W A H+ EC
Sbjct: 147 DRAGEKVCSRCRKSSYCSKKHQELHWRAKHKNEC 180
>04_03_0710 - 18916593-18917372,18917467-18917629,18917715-18917959
Length = 395
Score = 31.1 bits (67), Expect = 1.9
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 403 REASAECSLCRRTPYCSTYCQKKDW-ASHQIEC 434
R CS+C YCS CQ W +H+ EC
Sbjct: 336 RHEFRRCSVCGVVNYCSRACQALHWKTAHKAEC 368
>03_01_0465 +
3598815-3598972,3599949-3600711,3601073-3601159,
3601263-3601346,3601428-3601514,3601608-3601694,
3602239-3602292,3602380-3602471,3602564-3602678,
3602763-3602913,3603010-3603155
Length = 607
Score = 31.1 bits (67), Expect = 1.9
Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 382 QVLLHNVEDTESKKVQCANCNREASAECSLCRRTPYCSTYCQKKDWASHQIECLRSVPAI 441
+V + NV TE +QC C + ++ +CS C W H++ R++ A+
Sbjct: 61 RVAVCNVHPTEQATIQCLGCLKSKIPVA----KSYHCSAKCFSDAWQHHRVLHERALSAL 116
Query: 442 HTDAQQHQSI 451
+ + + + +
Sbjct: 117 NENGNEEEEL 126
>09_02_0573 -
10804171-10805096,10805188-10805377,10805920-10806363,
10806689-10807552,10809269-10809802
Length = 985
Score = 30.7 bits (66), Expect = 2.5
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 288 EAWQSIAEGLETTTDYQILGNPEIK---TDPPPNVPDMSAVLKRLDDISETLVRLSTELK 344
+ W +A G+ T + GN E+K PD VLK D + + LV ++ E
Sbjct: 507 KTWHPLASGVAVATLHSCFGN-ELKQFIAGLTELTPDTVQVLKAADKLEKDLVNIAVEDS 565
Query: 345 QCVEDVRRVSARQLERLEQERTSA-LLAASVDDQVD 379
+D + R++ E E A L+ + +++D
Sbjct: 566 VDSDDGGKSLIREMPPYEAENAIANLVKVWIKERID 601
>07_03_0963 +
22949898-22949985,22950295-22950364,22951204-22951270,
22951361-22951456,22951796-22951893,22951921-22952089,
22952899-22952940,22953967-22954023,22954116-22954166,
22954284-22954340,22954522-22954539
Length = 270
Score = 30.7 bits (66), Expect = 2.5
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 328 RLDDISETLVRLSTELKQCVEDVRRVSARQLERLEQERTSALLAASVDDQVDPEQVLLHN 387
R ++++T+ +L+ E K + ++RR + + ++LE+E+ + +D V L
Sbjct: 194 RRKELAKTVAKLAEEGKVAIRNIRRDAIKAYDKLEKEKKLS------EDNVKDLSADLQK 247
Query: 388 VEDTESKKVQCANCNRE 404
V D KK++ +E
Sbjct: 248 VTDEYMKKIEAIQKQKE 264
>05_04_0126 + 18252594-18256922
Length = 1442
Score = 30.3 bits (65), Expect = 3.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 196 SSKDWKRSIRFGGRSIQALIDEGILTP 222
+++DW +R G R QALID +TP
Sbjct: 742 TNEDWPTVVRHGKRCFQALIDRWFVTP 768
>03_02_0701 -
10523053-10523220,10523802-10523916,10524102-10524172,
10524263-10524420,10524497-10524590,10524678-10524766,
10525322-10525419,10525492-10525625,10525714-10525797,
10525903-10526151
Length = 419
Score = 29.9 bits (64), Expect = 4.4
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 409 CSLCRRTPYCSTYCQKKDWAS-HQIECLRSV 438
CS C++ YCS Q W S H+ +CL+ +
Sbjct: 204 CSSCKKARYCSEKHQTLHWRSGHKSDCLQLI 234
>01_06_1193 -
35306608-35306777,35306869-35306890,35306988-35306996,
35307107-35307115,35307470-35307491,35307981-35308784,
35308861-35309088,35309250-35309335,35309449-35309530,
35309630-35309778,35309992-35310105,35310961-35311059,
35311243-35311321,35311873-35312021
Length = 673
Score = 29.9 bits (64), Expect = 4.4
Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 9/122 (7%)
Query: 7 SDNVVMP--DITEVSEADPLSTATEHDNERVEGTSVLSTTIKNTRLSNDSNGVVTVPVSL 64
+DNV P D E A P+ST E + E E T + K+ S+DS +
Sbjct: 291 ADNVEAPKEDPAEKPSAPPISTLEEEEEEEDEFTRLAQRKNKSVMTSDDSLSSTGDLALV 350
Query: 65 PVGTLIAGTTFNVITSDHLPHFKPMICVDNGFISGGPVSDELKATHIVIQNPPSPTRTNC 124
P+ + ++ +V ++ +P VD +S P + E ++ SPT
Sbjct: 351 PIDMESSESSSSVASNALVP-------VDPALVSSSPQTKEQDMIDLLSLTLCSPTHEAS 403
Query: 125 ED 126
D
Sbjct: 404 TD 405
>05_05_0305 - 23970692-23970825,23972323-23973703
Length = 504
Score = 29.5 bits (63), Expect = 5.9
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 6 SSDNVVMPDITEVSEADPLSTATEHDNERVEGTSVLSTTIKNTR 49
S V++PD++ +EA P+ E D+E+ G ++ +K R
Sbjct: 386 SRGRVILPDLSSAAEALPVCLVNEVDHEKGPGHFTYASQVKYLR 429
>02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942
Length = 379
Score = 29.5 bits (63), Expect = 5.9
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 409 CSLCRRTPYCSTYCQKKDW-ASHQIECLRSVPAIH 442
CS+C YCS CQ W +H+ C VP H
Sbjct: 322 CSVCSGVIYCSRACQAMHWKVAHKSAC---VPMAH 353
>03_01_0611 + 4493618-4493641,4494705-4494730,4495758-4497471,
4498179-4499263,4499351-4500296
Length = 1264
Score = 29.1 bits (62), Expect = 7.8
Identities = 13/49 (26%), Positives = 20/49 (40%)
Query: 272 SEVDNIHQSSENSHSKEAWQSIAEGLETTTDYQILGNPEIKTDPPPNVP 320
S+++ S+ N+H K +W A+ GNP P P P
Sbjct: 1084 SDIEARPPSARNNHEKSSWLQTAKEQPAPPPSVTSGNPSPSPSPSPTAP 1132
>03_01_0097 + 771994-772674
Length = 226
Score = 29.1 bits (62), Expect = 7.8
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 194 RASSKDWKRSIRFGGRSIQALIDEGILTPHATSCTCGACCDDQ 236
RA++K R + GG ++ + +EG C CG C DD+
Sbjct: 137 RATAKASARGLGCGGTRLEGIPEEG----WGCDCECGTCGDDE 175
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.128 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,286,500
Number of Sequences: 37544
Number of extensions: 533917
Number of successful extensions: 1104
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1093
Number of HSP's gapped (non-prelim): 21
length of query: 460
length of database: 14,793,348
effective HSP length: 85
effective length of query: 375
effective length of database: 11,602,108
effective search space: 4350790500
effective search space used: 4350790500
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 62 (29.1 bits)
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