GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002019-TA|BGIBMGA002019-PA|IPR002893|Zinc finger,
MYND-type, IPR000770|SAND, IPR010919|SAND-like
         (460 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    26   0.64 
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    26   0.64 
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    26   0.64 
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    24   2.6  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    23   6.0  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    23   6.0  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    23   6.0  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    22   7.9  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 25.8 bits (54), Expect = 0.64
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 42  STTIKNTRLSNDSNGVVTVPVSLPVGTLI 70
           S T  NT  +N+SNG  +V  S P   LI
Sbjct: 133 SATNNNTNFNNNSNGASSVGSSSPFDKLI 161


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 25.8 bits (54), Expect = 0.64
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 42  STTIKNTRLSNDSNGVVTVPVSLPVGTLI 70
           S T  NT  +N+SNG  +V  S P   LI
Sbjct: 81  SATNNNTNFNNNSNGASSVGSSSPFDKLI 109


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 25.8 bits (54), Expect = 0.64
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 42  STTIKNTRLSNDSNGVVTVPVSLPVGTLI 70
           S T  NT  +N+SNG  +V  S P   LI
Sbjct: 264 SATNNNTNFNNNSNGASSVGSSSPFDKLI 292


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 12/44 (27%), Positives = 21/44 (47%)

Query: 368 ALLAASVDDQVDPEQVLLHNVEDTESKKVQCANCNREASAECSL 411
           +L+  +   +    Q L+ N+E   S   QC  C+R  S + +L
Sbjct: 107 SLIEVTKTSETSKLQQLVDNIEHKLSDPNQCVICHRVLSCKSAL 150


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 22.6 bits (46), Expect = 6.0
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 13  PDITEVSEADPLSTATEHDNERVEGTSVLSTTIKNTR 49
           P+   +   D ++    HDN+R  G+ +L  T KN +
Sbjct: 287 PEWNLLDGLDAVAFIDNHDNQRTGGSQIL--TYKNPK 321


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 22.6 bits (46), Expect = 6.0
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 13  PDITEVSEADPLSTATEHDNERVEGTSVLSTTIKNTR 49
           P+   +   D ++    HDN+R  G+ +L  T KN +
Sbjct: 288 PEWNLLDGLDAVAFIDNHDNQRTGGSQIL--TYKNPK 322


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 22.6 bits (46), Expect = 6.0
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 13  PDITEVSEADPLSTATEHDNERVEGTSVLSTTIKNTR 49
           P+   +   D ++    HDN+R  G+ +L  T KN +
Sbjct: 288 PEWNLLDGLDAVAFIDNHDNQRTGGSQIL--TYKNPK 322


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 22.2 bits (45), Expect = 7.9
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 296 GLETTTDYQILGNPEIKTDPPPNVPDMSA 324
           G+E++  Y  L NP    D      DMSA
Sbjct: 26  GVESSAFYSPLSNPYALKDAGGTAADMSA 54


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.128    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,265
Number of Sequences: 317
Number of extensions: 3904
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 8
length of query: 460
length of database: 114,650
effective HSP length: 59
effective length of query: 401
effective length of database: 95,947
effective search space: 38474747
effective search space used: 38474747
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 45 (22.2 bits)