Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002019-TA|BGIBMGA002019-PA|IPR002893|Zinc finger,
MYND-type, IPR000770|SAND, IPR010919|SAND-like
(460 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31470| Best HMM Match : SAND (HMM E-Value=5e-37) 163 2e-40
SB_34911| Best HMM Match : No HMM Matches (HMM E-Value=.) 82 1e-15
SB_10858| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 1e-08
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 4e-05
SB_56686| Best HMM Match : Cadherin (HMM E-Value=0) 42 0.001
SB_7007| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.002
SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.002
SB_10657| Best HMM Match : zf-MYND (HMM E-Value=2.6e-06) 39 0.010
SB_19193| Best HMM Match : zf-MYND (HMM E-Value=0.00017) 38 0.017
SB_8926| Best HMM Match : adh_short (HMM E-Value=1.5e-15) 38 0.017
SB_55606| Best HMM Match : TPR_2 (HMM E-Value=8.3e-08) 38 0.022
SB_24756| Best HMM Match : 7tm_1 (HMM E-Value=2e-08) 36 0.052
SB_11364| Best HMM Match : TPR_2 (HMM E-Value=3e-06) 35 0.12
SB_3815| Best HMM Match : zf-MYND (HMM E-Value=1.3e-11) 35 0.12
SB_11312| Best HMM Match : Ank (HMM E-Value=2.1e-18) 35 0.16
SB_31125| Best HMM Match : zf-MYND (HMM E-Value=0.0003) 34 0.28
SB_40973| Best HMM Match : zf-MYND (HMM E-Value=0.061) 34 0.28
SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32) 33 0.36
SB_27679| Best HMM Match : zf-MYND (HMM E-Value=0.00039) 33 0.64
SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0) 32 0.84
SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.1
SB_15096| Best HMM Match : zf-MYND (HMM E-Value=4e-07) 31 1.5
SB_33005| Best HMM Match : zf-MYND (HMM E-Value=2.5e-07) 31 1.5
SB_30181| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_19637| Best HMM Match : Cullin (HMM E-Value=0) 31 1.5
SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 31 1.9
SB_9701| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.6
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0) 31 2.6
SB_54602| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.4
SB_8054| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.4
SB_47007| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.5
SB_44550| Best HMM Match : UIM (HMM E-Value=7.6) 30 4.5
SB_38335| Best HMM Match : Cullin (HMM E-Value=4e-08) 30 4.5
SB_50662| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.5
SB_45246| Best HMM Match : zf-MYND (HMM E-Value=0.19) 29 5.9
SB_12374| Best HMM Match : SlyX (HMM E-Value=1.2) 29 5.9
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.8
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.8
SB_12474| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.8
>SB_31470| Best HMM Match : SAND (HMM E-Value=5e-37)
Length = 912
Score = 163 bits (397), Expect = 2e-40
Identities = 68/97 (70%), Positives = 80/97 (82%)
Query: 141 SWTETANMPVLPVRCKNTSAELHKNKFGSGGRGRCIKYGIEWYTPSEFEALCGRASSKDW 200
SW N VL VRC+N +AELHK+K GSGGRG+CIKY EW TPSEFEA CGRASSKDW
Sbjct: 163 SWDAVINAEVLSVRCRNETAELHKSKLGSGGRGKCIKYNDEWMTPSEFEARCGRASSKDW 222
Query: 201 KRSIRFGGRSIQALIDEGILTPHATSCTCGACCDDQS 237
KRSIR+ GR++Q LI+EG+LTPHATSCTC +CC+D +
Sbjct: 223 KRSIRYSGRTLQTLIEEGVLTPHATSCTCASCCNDDT 259
>SB_34911| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 904
Score = 81.8 bits (193), Expect = 1e-15
Identities = 33/82 (40%), Positives = 52/82 (63%)
Query: 151 LPVRCKNTSAELHKNKFGSGGRGRCIKYGIEWYTPSEFEALCGRASSKDWKRSIRFGGRS 210
L ++C +A L+ +K G +G CI + EW TP+E + + GR ++KDWKRSIR+ G+S
Sbjct: 122 LEIQCGENAALLYVSKLCQGSKGPCILFNNEWLTPNELQYISGRETAKDWKRSIRYKGKS 181
Query: 211 IQALIDEGILTPHATSCTCGAC 232
+++LI G++ H C C C
Sbjct: 182 LKSLIARGLIKVHPPICDCLGC 203
>SB_10858| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 199
Score = 58.0 bits (134), Expect = 1e-08
Identities = 24/37 (64%), Positives = 28/37 (75%)
Query: 141 SWTETANMPVLPVRCKNTSAELHKNKFGSGGRGRCIK 177
SW N VL VRC+N +AELHK+K GSGGRG+CIK
Sbjct: 163 SWDAVINAEVLSVRCRNETAELHKSKLGSGGRGKCIK 199
>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 46.8 bits (106), Expect = 4e-05
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 395 KVQCANCNREASAECSLCRRTPYCSTYCQKKDWASHQIECLRSVPAIHTDAQQHQSIMLI 454
K+ C NC + +C+ C+ PYCS CQ++ W H+ C + +T
Sbjct: 138 KMPCTNCGKLGGKKCTACK-IPYCSRKCQQQHWPQHKTTCTWKISTTYTPEAHSTETSTQ 196
Query: 455 VESQH 459
SQH
Sbjct: 197 NVSQH 201
>SB_56686| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 1888
Score = 41.5 bits (93), Expect = 0.001
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 401 CNREASAECSLCRRTPYCSTYCQKKDWASHQIEC 434
C + A CS C YC CQ KDW H+ +C
Sbjct: 1846 CGQTAQFTCSACNSRGYCGQKCQLKDWGKHKTDC 1879
>SB_7007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 608
Score = 41.1 bits (92), Expect = 0.002
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 386 HNVE-DTESKKVQCANCNREAS--AECSLCRRTPYCSTYCQKKDWASHQIECLR 436
H V+ D S+++ C C+++ +CS C YCS CQ + W SH+ C +
Sbjct: 42 HKVDCDNVSRQLYCHKCSQKGGNMKQCSNCLSAWYCSKECQGEAWGSHKKRCTK 95
Score = 29.9 bits (64), Expect = 4.5
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 397 QCANCN--REASAECSLCRRTPYCSTYCQKKDWASHQIEC 434
QC +C E +C C YCS C+ + H+++C
Sbjct: 7 QCWHCCVFTEGGPKCLRCNIAEYCSAQCRDDNQWRHKVDC 46
>SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1769
Score = 40.7 bits (91), Expect = 0.002
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 381 EQVLLHNVEDTESKKVQCANCNREASAE-CSLCRRTPYCSTYCQKKDWASHQIECLRSVP 439
E+ + H E C C+R + CS CR YC CQK A H++ C +SV
Sbjct: 1367 EETMFHPKEQAMPVTQHCVFCHRTGKLKTCSNCRVASYCDQTCQKMHLAKHKLLC-KSVT 1425
Query: 440 AIHT 443
+++
Sbjct: 1426 GLYS 1429
>SB_10657| Best HMM Match : zf-MYND (HMM E-Value=2.6e-06)
Length = 167
Score = 38.7 bits (86), Expect = 0.010
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 388 VEDTESKKVQCANCN--REASAECSLCRRTPYCSTYCQKKDWASHQIEC 434
V + + ++ CANC + ++C C + YCS CQK+D H+ EC
Sbjct: 118 VVEQQQQQRMCANCGLAKIRLSKCGKCLKVYYCSRNCQKEDRKWHRQEC 166
>SB_19193| Best HMM Match : zf-MYND (HMM E-Value=0.00017)
Length = 294
Score = 37.9 bits (84), Expect = 0.017
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 392 ESKKVQCANC--NREASAECSLCRRTPYCSTYCQKKDW-ASHQIECLRSVPAIHTDAQQH 448
E K C C + A CS C YCS C K+ W A H EC+ H
Sbjct: 71 EQSKSHCHQCFVHILAPLPCSYCTTVRYCSEKCAKESWDAYHYAECMNLEHVYVAGKYGH 130
Query: 449 QSIMLIVESQHQ 460
++ ++V++ Q
Sbjct: 131 LALRVVVKAGFQ 142
>SB_8926| Best HMM Match : adh_short (HMM E-Value=1.5e-15)
Length = 537
Score = 37.9 bits (84), Expect = 0.017
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 390 DTESKKVQCANCNREASAE--CSLCRRTPYCSTYCQKKDWASHQIEC 434
D E CA C ++ + C+ CR YCS CQ W H++ C
Sbjct: 6 DFEGVNAYCAVCRQKQNHMKICTRCRGVLYCSRSCQSIHWPKHKVTC 52
>SB_55606| Best HMM Match : TPR_2 (HMM E-Value=8.3e-08)
Length = 771
Score = 37.5 bits (83), Expect = 0.022
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 392 ESKKVQCANCNRE--ASAECSLCRRTPYCSTYCQKKDWAS-HQIECLRSVPAIH-TDAQQ 447
E+ K C C + A C+ C YCS C+ K W+ H +EC P + D
Sbjct: 325 ENAKTHCECCYKSLVAPVPCNHCSSVLYCSAACRNKAWSQYHHVEC-EIFPVLEIVDTFT 383
Query: 448 HQSIMLIV 455
H S+ +++
Sbjct: 384 HLSLRILL 391
>SB_24756| Best HMM Match : 7tm_1 (HMM E-Value=2e-08)
Length = 690
Score = 36.3 bits (80), Expect = 0.052
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 395 KVQCANCNREASAECSLCRRTPYCSTYCQKKDWAS-HQIEC-----LRS-VPAIHT-DAQ 446
K+ C C + A +C+ CR T YC Q+ DW H+ C LRS +P + + D +
Sbjct: 14 KLVCELCQKPAFVQCTDCRVTYYCGPEHQRADWLGIHEKICQLLMALRSPIPFLGSEDER 73
Query: 447 QHQSIMLIVESQ 458
QH+ I+ +
Sbjct: 74 QHRKQQQIIRQK 85
>SB_11364| Best HMM Match : TPR_2 (HMM E-Value=3e-06)
Length = 357
Score = 35.1 bits (77), Expect = 0.12
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 392 ESKKVQCANC--NREASAECSLCRRTPYCSTYCQKKDW-ASHQIEC 434
E K C C + A CS C YCS C K+ W A H EC
Sbjct: 275 EQSKSHCHQCFVHILAPLPCSYCTTVRYCSEKCAKESWDAYHYAEC 320
>SB_3815| Best HMM Match : zf-MYND (HMM E-Value=1.3e-11)
Length = 281
Score = 35.1 bits (77), Expect = 0.12
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 397 QCANCNREAS--AECSLCRRTPYCSTYCQKKDWASHQIEC---LRSVPAIHTD 444
+C C + S CS C+ YC CQ+ W H+ EC R P + TD
Sbjct: 50 RCDFCLEKLSDLQRCSRCKFARYCGASCQRAAWRIHKSECERLKRVFPRVPTD 102
>SB_11312| Best HMM Match : Ank (HMM E-Value=2.1e-18)
Length = 516
Score = 34.7 bits (76), Expect = 0.16
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 398 CANCNREASAE---CSLCRRTPYCSTYCQKKDWAS-HQIECLR 436
C C R C+ C+ YCS C+ K W S H+ EC+R
Sbjct: 392 CYECGRSIGVRLSACTRCKEVFYCSKSCKLKAWNSRHREECVR 434
>SB_31125| Best HMM Match : zf-MYND (HMM E-Value=0.0003)
Length = 109
Score = 33.9 bits (74), Expect = 0.28
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 409 CSLCRRTPYCSTYCQKKDWA-SHQIEC 434
CS C YC+ CQ++DW+ HQ +C
Sbjct: 77 CSGCMSKFYCNEICQERDWSLGHQFDC 103
>SB_40973| Best HMM Match : zf-MYND (HMM E-Value=0.061)
Length = 125
Score = 33.9 bits (74), Expect = 0.28
Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 310 EIKTDPPPNVPDMSAVLKRLDDISETLVRLSTELKQC--VED--VRRVSARQLERLEQER 365
EI D P++ D+ L+ L + + L+Q V D +++ + + L+ + +R
Sbjct: 7 EILLDQIPSLVDLQRYLEHLAIMEPPATKRDIILEQVPEVRDNLIKQNTGQWLKIADYQR 66
Query: 366 TSALLAASVDDQVDPEQ-VLLHNVEDTE---SKKVQCANCNREASAECSLCRRTPYC 418
+ + D + + +N++ E S+ +CANC + A+ CS C+ YC
Sbjct: 67 KNYFTPSDSDVRKQAQAWAATYNLDALEELISEPPKCANCGKPATKRCSRCQNEWYC 123
>SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)
Length = 905
Score = 33.5 bits (73), Expect = 0.36
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 408 ECSLCRRTPYCSTYCQKKDWASHQIEC 434
+CS C+ T YCS C + W H+ C
Sbjct: 20 KCSRCKSTMYCSKDCPRSHWKHHKAIC 46
>SB_27679| Best HMM Match : zf-MYND (HMM E-Value=0.00039)
Length = 167
Score = 32.7 bits (71), Expect = 0.64
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 409 CSLCRRTPYCSTYCQKKDWAS-HQIECLR 436
C+ C+ YCS C+ K W S H+ EC+R
Sbjct: 32 CTRCKEVFYCSKSCKLKAWNSRHREECVR 60
>SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)
Length = 2726
Score = 32.3 bits (70), Expect = 0.84
Identities = 16/56 (28%), Positives = 28/56 (50%)
Query: 6 SSDNVVMPDITEVSEADPLSTATEHDNERVEGTSVLSTTIKNTRLSNDSNGVVTVP 61
SS + + + S P ++ H R+ S+ S+T++ ++LSNDS T P
Sbjct: 975 SSQSTFLSSPSSTSLQQPSPSSQPHSEPRLPSPSLESSTLQTSQLSNDSPNSYTAP 1030
>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2317
Score = 31.9 bits (69), Expect = 1.1
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 6 SSDNVVMPDITEVSEADPLST-ATEHDNERVEGTSVLS-TTIKNTRLSNDSNGVVTVPVS 63
S+D +T+ + A P++T T + +GT+VLS +T + T S + G P+
Sbjct: 1001 STDETTSASMTKHATAAPITTNGTTAEPISTDGTTVLSMSTARTTTASMSTAGTTAAPI- 1059
Query: 64 LPVGTLIAGTTFNVITSD 81
+ GT A T N T++
Sbjct: 1060 ITNGTTAAPITTNGTTTE 1077
>SB_15096| Best HMM Match : zf-MYND (HMM E-Value=4e-07)
Length = 84
Score = 31.5 bits (68), Expect = 1.5
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 409 CSLCRRTPYCSTYCQKKDWASHQIEC 434
C C T YCS CQ KDW H+ C
Sbjct: 45 CVRCGET-YCSRGCQTKDWKEHKRIC 69
>SB_33005| Best HMM Match : zf-MYND (HMM E-Value=2.5e-07)
Length = 145
Score = 31.5 bits (68), Expect = 1.5
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 409 CSLCRRTPYCSTYCQKKDWASHQIEC 434
C C T YCS CQ KDW H+ C
Sbjct: 106 CVRCGET-YCSRGCQTKDWKEHKRIC 130
>SB_30181| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 31.5 bits (68), Expect = 1.5
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 409 CSLCRRTPYCSTYCQKKDWASHQIEC 434
C C T YCS CQ KDW H+ C
Sbjct: 111 CVRCGET-YCSRGCQTKDWKEHKRIC 135
>SB_19637| Best HMM Match : Cullin (HMM E-Value=0)
Length = 685
Score = 31.5 bits (68), Expect = 1.5
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 24 LSTATEHDNERVEGTSVLST-TIKNTRLSNDSNGVVTVPVSLPVGTLIA 71
+ST H ++++EGT ++ + NT +S+ G + V + V TLI+
Sbjct: 253 ISTVNTHISDKIEGTCCMTVMSTSNTLISDKIEGTCCMTVMITVNTLIS 301
>SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 3804
Score = 31.1 bits (67), Expect = 1.9
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 363 QERTSALLAASVDDQVDPEQVLLHNVEDTESKKVQCANCNREASA--ECSLCRRT 415
++ T++LL S +D ++ L ED+ CA ++ +A ECS CRRT
Sbjct: 609 KDGTASLLVGSAAIVIDTYELCLFFSEDSVDVMRSCAVTTKQTAAATECSPCRRT 663
>SB_9701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 535
Score = 30.7 bits (66), Expect = 2.6
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 9 NVVMPDITE--VSEADPLSTATEHDNERVEGTSVLSTTIKNTRLSNDSNGVVTVP 61
N++ PD E ++ ADPLST ++ + S + T ++ D VT+P
Sbjct: 237 NILKPDTPEQIINLADPLSTEENYNRSTMSSASAFAIAFGETSVAFDFAPPVTIP 291
>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
Length = 2858
Score = 30.7 bits (66), Expect = 2.6
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 327 KRLDDISETLVRLSTELKQCVEDVRRVSARQLERLEQERTSALLAASVDDQVDPEQVLLH 386
K+ DD+ L RL ELK+ + + V LE+ + S D QV +
Sbjct: 262 KQRDDLKRQLERLREELKRSKDSMNEVRRDALEQKKAADRLREEVGSKDKQVRNYERKNS 321
Query: 387 NVED-TESKKVQCANCNREASAE 408
++ED E+ K C+ +A E
Sbjct: 322 DLEDQVEALKQDCSQAQMKAEVE 344
Score = 29.9 bits (64), Expect = 4.5
Identities = 26/123 (21%), Positives = 58/123 (47%), Gaps = 4/123 (3%)
Query: 272 SEVDNIHQSSENSHSKEAWQSIAEGLETTTDYQILGNPEIKTDPPPNVPDMSAVLKRLDD 331
+E DN+ + + S KE + E L+ N +K ++ + R+++
Sbjct: 1341 AEKDNLTDNLQAS--KEYIEGQLESLKAQMSKIKDENENLKESDARRQQEILDLENRINE 1398
Query: 332 ISETLVRLSTELKQCVEDVRRVSARQLERLEQE-RTSALLAASVDDQVDPEQVLLHNVED 390
+ L R+S E + +ED+R S ++ LEQ+ R S+D++++ + ++ + D
Sbjct: 1399 LENMLARISAERDRALEDLR-TSTAKISTLEQQIRDLTKDRNSLDEKIEELRRQVNTLRD 1457
Query: 391 TES 393
++
Sbjct: 1458 EKN 1460
>SB_54602| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 450
Score = 30.3 bits (65), Expect = 3.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 417 YCSTYCQKKDWASHQIECLR 436
YCS CQK W++H+ C R
Sbjct: 355 YCSVSCQKLHWSTHKKHCQR 374
>SB_8054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 415
Score = 30.3 bits (65), Expect = 3.4
Identities = 18/69 (26%), Positives = 29/69 (42%)
Query: 6 SSDNVVMPDITEVSEADPLSTATEHDNERVEGTSVLSTTIKNTRLSNDSNGVVTVPVSLP 65
SS V+M + +++ + L+T T + TS +TT T+ + S T
Sbjct: 213 SSSAVIMTNAPKITTTEQLATTTAAETTPTTTTSASTTTATTTKATTTSVSTTTATTKEE 272
Query: 66 VGTLIAGTT 74
T A TT
Sbjct: 273 ESTTTAETT 281
>SB_47007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1174
Score = 29.9 bits (64), Expect = 4.5
Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 4/111 (3%)
Query: 332 ISETLVRLSTELKQCVEDVRRVSARQLERLEQERTSALLAASVDDQVDPEQ--VLLHNVE 389
++ + L ELK+ + ++ + E E+E + A DQV EQ L
Sbjct: 640 VNARVAELEKELKEKTKSAEKL-VKASENREKEIDALKRALQDQDQVMEEQQDALTERQL 698
Query: 390 DTESKKVQCANCNREASAECSLCRRTPYCSTYCQKKDWASHQIECLRSVPA 440
+ ES + + ++ SL RR S Y ++KD +++ LR A
Sbjct: 699 EIESLTEELRTLTDQNTSTYSL-RREGTLSVYIEEKDQLQRELDALRKTEA 748
>SB_44550| Best HMM Match : UIM (HMM E-Value=7.6)
Length = 83
Score = 29.9 bits (64), Expect = 4.5
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 5 RSSDNVVMPDITEVSEADPLSTATEHDNERVEGTSVLSTTIKNTRLSNDSNGVVTVPVS 63
+S+ +V P + +AD ++E D + TS + I + SND NG++ P+S
Sbjct: 17 QSTGGIVNPVFDDAGDADNELNSSEEDITQATATSFQTEPIIHRTYSND-NGIIPRPLS 74
>SB_38335| Best HMM Match : Cullin (HMM E-Value=4e-08)
Length = 278
Score = 29.9 bits (64), Expect = 4.5
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 24 LSTATEHDNERVEGTSVLST-TIKNTRLSNDSNGVVTVPVSLPVGTLIA 71
+ST H +++VEGT ++ + NT +S+ G + V V TLI+
Sbjct: 135 MSTVNTHISDKVEGTCCMTVMSTSNTLISDKIEGTCCMMVMSTVNTLIS 183
>SB_50662| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 161
Score = 29.9 bits (64), Expect = 4.5
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 10/66 (15%)
Query: 375 DDQVDPEQVLLHNVEDTESKKVQCANCNREASAE-----CSLCRRTPYCSTYCQKKDW-A 428
D Q+ PE +L ES C C E + C C YCS+ CQ++ W
Sbjct: 85 DIQLLPETTILDAAHFRES----CGGCGWEENGPERLYLCGGCLGVRYCSSLCQRRHWEE 140
Query: 429 SHQIEC 434
H+ C
Sbjct: 141 EHRRVC 146
>SB_45246| Best HMM Match : zf-MYND (HMM E-Value=0.19)
Length = 1828
Score = 29.5 bits (63), Expect = 5.9
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 401 CNREASAECSLCRRTPYCSTYCQKKDWASHQIEC 434
C A+ C C YCS C+++D +H C
Sbjct: 1671 CGLVANQRCQECDVQGYCSDACREEDSINHTTRC 1704
>SB_12374| Best HMM Match : SlyX (HMM E-Value=1.2)
Length = 157
Score = 29.5 bits (63), Expect = 5.9
Identities = 11/36 (30%), Positives = 24/36 (66%)
Query: 327 KRLDDISETLVRLSTELKQCVEDVRRVSARQLERLE 362
+RL+D+ + +RL+T+L+ + + RR + Q E+ +
Sbjct: 120 QRLEDLRDENIRLTTQLESALSEARRQAESQREKTQ 155
>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3592
Score = 29.1 bits (62), Expect = 7.8
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 218 GILTPHATSCTCGACCDDQSAMGPVRLFTPY 248
G+ P T G CD S GP LF P+
Sbjct: 2862 GLAGPDGTKSVFGQACDKMSNFGPESLFLPH 2892
>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3760
Score = 29.1 bits (62), Expect = 7.8
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 327 KRLDDISETLVRLSTELKQCVEDVRRVSARQLERL-EQERTSALLAASVDDQVDPEQVLL 385
+++DD + L+ L+ + ++ R E L +Q++ L +VD+ ++ L
Sbjct: 1013 EQIDDTRQQKTNLADALENVYQSKEKLQHRLDEALCKQDQYKNSLVEAVDEAKTLKESLY 1072
Query: 386 HNVEDTESKKVQCANCNRE 404
V + E+ K N NRE
Sbjct: 1073 RMVNEHETMKESLLNANRE 1091
>SB_12474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1393
Score = 29.1 bits (62), Expect = 7.8
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 348 EDVRRVSARQLERLEQERTSAL----LAASVDDQVDPEQVLLHNVEDTESKKVQCANCNR 403
E +++++ + RL+Q+ S + + + + +D V L E + C C +
Sbjct: 52 EKLQQLTDIRERRLQQDEDSPYRYEDICSQIPNNLDGIDVELSGTFGVEKFPLTCIFCEK 111
Query: 404 EASAECSLCRRTPYCSTYCQKKD 426
EC L R+T C+T+ KD
Sbjct: 112 ---LECKLKRKTERCTTFAVYKD 131
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.314 0.128 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,260,542
Number of Sequences: 59808
Number of extensions: 611179
Number of successful extensions: 1460
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1430
Number of HSP's gapped (non-prelim): 45
length of query: 460
length of database: 16,821,457
effective HSP length: 85
effective length of query: 375
effective length of database: 11,737,777
effective search space: 4401666375
effective search space used: 4401666375
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 62 (29.1 bits)
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