GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002019-TA|BGIBMGA002019-PA|IPR002893|Zinc finger,
MYND-type, IPR000770|SAND, IPR010919|SAND-like
         (460 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   1.3  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   3.1  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   7.1  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 3/66 (4%)

Query: 321  DMSAVLKRLDDISETLVRLSTELKQCVEDVRRVSARQLERLEQERTSALLAASVDDQVD- 379
            DM+  L++   + E LV  ++ +K CVED++R   + L   ++    ++L   VD  ++ 
Sbjct: 1286 DMNGKLRQSPRLKE-LVGATSIIKDCVEDMKR-GNKILRTCQKAVVLSMLLDEVDISMEV 1343

Query: 380  PEQVLL 385
            P   L+
Sbjct: 1344 PSDALI 1349


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 4/83 (4%)

Query: 38  TSVLSTTIKNTRLSNDSNGVVTVPVSLPVGTLIAGTTFNVITSDHLPHFKPMICVDNGFI 97
           T V + T ++   ++ +      P S+PVG+ +AGT    +        K     D+   
Sbjct: 31  TLVKAETPEHLAGTSTTAAATPTPPSVPVGSAVAGTAGGALFPGMAAAGKGAARSDDWLA 90

Query: 98  SG----GPVSDELKATHIVIQNP 116
           +     G  S  L+  H+V  NP
Sbjct: 91  NANSPVGSPSAALQPQHVVYGNP 113


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 12/29 (41%), Positives = 13/29 (44%)

Query: 20  EADPLSTATEHDNERVEGTSVLSTTIKNT 48
           E D  S  TE DN  V     L+   KNT
Sbjct: 120 EPDFTSDVTERDNHLVNAFKTLTQEPKNT 148


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.128    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,866
Number of Sequences: 429
Number of extensions: 5087
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 3
length of query: 460
length of database: 140,377
effective HSP length: 60
effective length of query: 400
effective length of database: 114,637
effective search space: 45854800
effective search space used: 45854800
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 45 (22.2 bits)