Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002018-TA|BGIBMGA002018-PA|IPR013032|EGF-like region,
IPR000034|Laminin B, IPR002049|EGF-like, laminin, IPR001791|Laminin G,
IPR008211|Laminin, N-terminal, IPR002016|Haem peroxidase,
plant/fungal/bacterial, IPR000276|Rhodopsin-like GPCR superfamily,
IPR008985|Concanavalin A-like lectin/glucanase,
IPR008979|Galactose-binding like, IPR008972|Cupredoxin, IPR006210|EGF,
IPR010307|Laminin II, IPR012680|Laminin G, subdomain 2
(3668 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 36 0.14
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 35 0.25
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 33 1.00
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 32 1.7
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 31 2.3
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe... 31 2.3
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 31 3.0
SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomy... 31 3.0
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 30 5.3
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 30 5.3
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 30 7.0
SPBC1D7.01 |||prefoldin subunit 1 |Schizosaccharomyces pombe|chr... 29 9.3
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 35.5 bits (78), Expect = 0.14
Identities = 40/157 (25%), Positives = 62/157 (39%), Gaps = 10/157 (6%)
Query: 2062 LIPQEGCLECDSCTDALIFSVEDLSALLANETMDFKDKADSFF---TTQRLNYISNQTEL 2118
++ E E S AL SV LS LA+ M A F T+ +++
Sbjct: 148 VLTDEDTEEVASIQPALSTSVSSLS--LASTAMSKSASASEFSGSSVTKASKKLTSSPTS 205
Query: 2119 LRPKVAQLKTVDIGEVTSSIKTLETSAKNLLRSAEFAATDSDKQISRAAKLAEDAERTLA 2178
+ K A L +V TSS+ SA +SA D++ I A ++ E
Sbjct: 206 VASKKATLSSVSKVASTSSLPVTSVSASVDPKSAASKVQDAEFSIQTAPSFPKEKEE--- 262
Query: 2179 AVRESAREATEVVKHVADLATGLELSQQPKVDSALTE 2215
+E+ E E K + T L+ +D+ALT+
Sbjct: 263 --KENTEETEESKKSINPTGTSKALALDADIDAALTD 297
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 34.7 bits (76), Expect = 0.25
Identities = 29/105 (27%), Positives = 38/105 (36%), Gaps = 10/105 (9%)
Query: 433 GKSCEICEDGYYSPECKNCECN-TVGSVSYVCDKLTGDCT--CKSKYSGRTCNQ----CQ 485
G+ C+ ED +P C C T GS+ CD C C K +G C Q C
Sbjct: 326 GEECDCGEDCENNPCCDGKTCKLTKGSL---CDDQQDACCYQCHFKNAGTLCRQSTNPCD 382
Query: 486 AGYYNYPTCKPCNCDTSGTEPSICDDVSGQCICKAGFGGPRCDQC 530
+ C D + + IC D G C +G QC
Sbjct: 383 KPEFCTGISSKCPVDENWDDGRICQDSLGMGSCASGVCTSASRQC 427
Score = 29.5 bits (63), Expect = 9.3
Identities = 35/127 (27%), Positives = 44/127 (34%), Gaps = 13/127 (10%)
Query: 651 GCGSVPAGELCQCKDRVQGRICND---CKPLYWNL-QEYNPFGCEQCNCNLAGTL--NSL 704
G G V GE C C + + C D CK +L + C QC+ AGTL S
Sbjct: 319 GNGIVEDGEECDCGEDCENNPCCDGKTCKLTKGSLCDDQQDACCYQCHFKNAGTLCRQST 378
Query: 705 GACNTKSGQCVCKQHVGERQCDQCLDGFYRLQTNDVFGCTECDCDIGGSIDNNCDKTT-- 762
C+ C + D+ D Q D G C + S C K T
Sbjct: 379 NPCDKPE---FCTGISSKCPVDENWDDGRICQ--DSLGMGSCASGVCTSASRQCKKLTNF 433
Query: 763 GQCHCHS 769
CHS
Sbjct: 434 SSLSCHS 440
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 32.7 bits (71), Expect = 1.00
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 13/79 (16%)
Query: 426 PCKYNYAGKSCEICEDGYYSPECKNCECNTVG-SVSYVCDKLTGDC-TCKSKYSGRTCNQ 483
PC Y C+ C D Y+ +CK C +G SV + C TC + CN
Sbjct: 356 PCIYRDDLYWCQTCYDNKYAVKCKKCRKPILGISVKGSDGEYHSQCWTCGA------CNA 409
Query: 484 C--QAGYY---NYPTCKPC 497
GY+ N P C+PC
Sbjct: 410 LLGDEGYFMIENTPICRPC 428
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 31.9 bits (69), Expect = 1.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 3143 GVQPGYVVSGSLGSKVPFTGCIGDATINGQVLN 3175
G QP Y V+G L + P+ G + + T G V N
Sbjct: 26 GFQPVYPVAGQLDNTAPYVGAVAEGTAEGIVSN 58
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 31.5 bits (68), Expect = 2.3
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 560 CSADGKCNCLTNFGGAQCDQCS-PGYYKYPDCLSCNCDVSG 599
C D + T G C+QC+ Y K P C+ C D G
Sbjct: 257 CKKDYRSPIATTCGHHFCEQCAITRYRKTPTCIQCGADTKG 297
>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 31.5 bits (68), Expect = 2.3
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 2711 MDIGDSSEPGQDPARVSIDKMVADNRWYQVIVDRLGR 2747
M + D + G PA V+ + V D+ +Y+V+++RLGR
Sbjct: 272 MSVVDWWQVGLLPANVTFLRTVDDDEFYEVLIERLGR 308
>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 31.1 bits (67), Expect = 3.0
Identities = 42/158 (26%), Positives = 67/158 (42%), Gaps = 16/158 (10%)
Query: 2083 EDLSALLAN---ETMDFKDKADSFFTTQRLNY-ISNQTELLRPKVAQLKTVDIGEVTSSI 2138
+D LLA ET K+ + + +QRL + ++T L A +K + TSS
Sbjct: 4 DDFRKLLATPKAETSQLKNFSSN--KSQRLVFGRKHKTAKLEAPRALIKRKQLSHSTSSD 61
Query: 2139 KTLETSAKNLLRSAEFAATDSDKQISRAAKLAEDAERTLAAVRESAREATEV--VKHVAD 2196
T ++AKN + +F S KQ KL E +E + ++ E+ +
Sbjct: 62 ITRHSNAKNSGKDTQFYEEPSSKQDIELHKLHEKLRNGQITTKEYSEKSKELGGDLNTTH 121
Query: 2197 LATGLELSQQPKV--------DSALTEARQIRDDIADK 2226
L GL+ KV DS L+ + + D+ ADK
Sbjct: 122 LVRGLDRKLLEKVRSNELALDDSLLSSSEKEVDEEADK 159
>SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 442
Score = 31.1 bits (67), Expect = 3.0
Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Query: 1028 NQDLNTGNSTYSSVVKTPVTIKFQSGPDDQHL 1059
N+ + TGNSTY+ +VKT ++ +QSG D ++
Sbjct: 75 NRYIATGNSTYNELVKT--SMLYQSGEDSDYM 104
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 30.3 bits (65), Expect = 5.3
Identities = 38/178 (21%), Positives = 78/178 (43%), Gaps = 13/178 (7%)
Query: 2160 DKQIS--RAAKLAEDAERTLAAVRESAREATEVVKHVADLATGLELSQQ-PKVDSALTEA 2216
D+Q++ +AA+ A + LAA + +A++A + A++ +QQ + A+ A
Sbjct: 330 DQQLAAQQAAQQAAQQQAELAAQQAAAQQAQLAAQQAAEMERQRMAAQQHQQALEAIQMA 389
Query: 2217 RQIRDDIADKDLVPKKQQAEAVFLNTTTQIERMNFFVQPVNEQAKASSHRPDLKFESLVN 2276
+ + IA + L +QQ + ++E+ + EQ+ ++ D + +L N
Sbjct: 390 QAEQQRIAQEQLA--QQQFQMQTQGQLAELEQQLLATRGQLEQSNVLLNQYDARVRTLEN 447
Query: 2277 ATRELKDKLDDMLEYTDLAQHTAHTAEELNTKNRLSKFGNKVNSVTKLNTAAMGDLID 2334
+ L + + D E L KN++ + NK ++ KL T + +D
Sbjct: 448 ELSQAGVNLQEQIHQND------DLIESL--KNQILTWKNKYEALAKLYTQLRQEHLD 497
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 30.3 bits (65), Expect = 5.3
Identities = 33/176 (18%), Positives = 71/176 (40%), Gaps = 5/176 (2%)
Query: 2133 EVTSSIKTLETSAKNLLRSAEFAATDSDKQISRAAKLAEDAERTLAAVRESAREATEVVK 2192
E + K S K+ + + T +I + AE + +RE ++ + +
Sbjct: 362 ENSEKFKQNSESLKSRVDNLNDYITKLQNEIDECRRNLLWAESSCETIREENQKNIKKLN 421
Query: 2193 HVADLATGLELSQ---QPKVDSALTEARQIRDDIADKDLVPKKQQAEAVFLNTTTQIERM 2249
L + L S+ Q ++DS +T Q++D+I + +AE L ++ Q E+
Sbjct: 422 DAESLKSRLLQSRTQMQTELDSYITSNSQLKDEITSLKQTVSESEAERKRLFSSAQ-EKQ 480
Query: 2250 NFFVQPVNEQAKASSHRPDLKFESLVNATRELKDKLDDMLEYTDLAQHTAHTAEEL 2305
+ VN+ + L +L++K +++ E L + +++L
Sbjct: 481 LQMKETVNKLTSLQEQNNEFD-RQLKEQEEDLQNKEEELTELRKLLREQTQDSQKL 535
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 29.9 bits (64), Expect = 7.0
Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 17/104 (16%)
Query: 474 SKYSGRTCNQ----CQAGYYNYPTC--KPCNCDTSGTEPSICD--DVSGQCI-----CKA 520
SK S C+ C YY+ PTC +C S S C D +G C C
Sbjct: 19 SKTSASQCSPRYGTCGGIYYDGPTCCVVGSSCIYSNPWYSQCIPVDYTGPCAKLYQQCGG 78
Query: 521 -GFGGPRCDQCLSGYYMQVLGRE-RQCVPCNCDPTGSTSTSCSA 562
+ GP C C G G QC+P + DP+ S+S++ S+
Sbjct: 79 INYNGPTC--CEPGSECIYNGPYYSQCIPVDIDPSSSSSSAASS 120
>SPBC1D7.01 |||prefoldin subunit 1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 112
Score = 29.5 bits (63), Expect = 9.3
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 2547 SVMSHLGPELATSKDWAQTLPKLADEGQKMTSNVESHLKNIND 2589
SV +HL E+A+ ++ + L K + SN E HL+ I +
Sbjct: 67 SVRTHLDAEMASLREDIEALQKKQTYHETTASNAEQHLQKIKE 109
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.319 0.136 0.429
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,428,761
Number of Sequences: 5004
Number of extensions: 782263
Number of successful extensions: 1673
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1663
Number of HSP's gapped (non-prelim): 21
length of query: 3668
length of database: 2,362,478
effective HSP length: 87
effective length of query: 3581
effective length of database: 1,927,130
effective search space: 6901052530
effective search space used: 6901052530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 63 (29.5 bits)
- SilkBase 1999-2023 -