Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002017-TA|BGIBMGA002017-PA|IPR001356|Homeobox,
IPR000327|POU-specific, IPR010982|Lambda repressor-like, DNA-binding,
IPR009057|Homeodomain-like
         (235 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21B10.13c |||transcription factor, homeobox type |Schizosacc...    36   0.004
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    32   0.083
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    28   1.4  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    28   1.4  

>SPBC21B10.13c |||transcription factor, homeobox type
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 201

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 4/61 (6%)

Query: 170 EKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKITAIAEKL--DLKKNVVRVWFCNQRQKQK 227
           +K+R+RT+ A  E   LE YF   P+PS  +   +++KL   +    +++WF N+RQ  +
Sbjct: 34  KKRRRRTTDA--EATLLEQYFLKTPKPSLIERQELSKKLKSSMTPRELQIWFQNKRQSLR 91

Query: 228 R 228
           R
Sbjct: 92  R 92


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 31.9 bits (69), Expect = 0.083
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)

Query: 73  DTDTDPRELEAFAERFKQRRIKLGVTQADVGKALANLKLPGV----GALSQSTICRFESL 128
           +TD+    L  F+ RFK+R +++    AD+G  +A+++L       G L  S I +   L
Sbjct: 360 ETDSFIGGLRHFSSRFKERILEMSCVDADIGVRVASIRLCNAMRTCGFLENSEILKVLKL 419

Query: 129 TLSHN 133
            L  N
Sbjct: 420 ILDIN 424


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 175 RTSIAAPEKRSLEAYF---AVQPRPSGEKITAIAEKLDLKKNVVRVWFC 220
           RTSI   ++++L+A     + Q + + +K+T +  KL++  N +  W C
Sbjct: 900 RTSILYEKQKNLQASITEVSKQLKSNSKKVTVLRNKLNILNNSLSKWKC 948


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/56 (26%), Positives = 25/56 (44%)

Query: 172 KRKRTSIAAPEKRSLEAYFAVQPRPSGEKITAIAEKLDLKKNVVRVWFCNQRQKQK 227
           K K+  + A +   L   F+    P       I  +L++ +  V +WF N+R K K
Sbjct: 167 KSKKQRLTADQLAYLLREFSKDTNPPPAIREKIGRELNIPERSVTIWFQNRRAKSK 222


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.131    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 848,951
Number of Sequences: 5004
Number of extensions: 27590
Number of successful extensions: 67
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 64
Number of HSP's gapped (non-prelim): 4
length of query: 235
length of database: 2,362,478
effective HSP length: 71
effective length of query: 164
effective length of database: 2,007,194
effective search space: 329179816
effective search space used: 329179816
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)