GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002016-TA|BGIBMGA002016-PA|IPR008853|TMEM9
         (97 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr 2|||M...    25   2.1  
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce...    24   4.8  

>SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 116

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 8/12 (66%), Positives = 9/12 (75%)

Query: 24 EFCPRCDCHFEI 35
          E+CP CD HF I
Sbjct: 65 EYCPNCDNHFVI 76


>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 563

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)

Query: 22  ELEFCPRCDCHFEI 35
           +L+FC  C+C F I
Sbjct: 121 KLDFCAHCNCRFTI 134


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.140    0.438 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 369,889
Number of Sequences: 5004
Number of extensions: 9273
Number of successful extensions: 18
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 2
length of query: 97
length of database: 2,362,478
effective HSP length: 62
effective length of query: 35
effective length of database: 2,052,230
effective search space: 71828050
effective search space used: 71828050
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 47 (23.0 bits)