GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002016-TA|BGIBMGA002016-PA|IPR008853|TMEM9
         (97 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23510-7|AAC46785.1|  261|Caenorhabditis elegans Hypothetical pr...    54   1e-08
U23510-8|ABC71804.1|  128|Caenorhabditis elegans Hypothetical pr...    50   2e-07
U64857-5|AAN84848.1|  143|Caenorhabditis elegans Hypothetical pr...    27   2.7  
AL033514-8|CAA22114.1|  648|Caenorhabditis elegans Hypothetical ...    26   4.8  

>U23510-7|AAC46785.1|  261|Caenorhabditis elegans Hypothetical
           protein R12C12.6a protein.
          Length = 261

 Score = 54.4 bits (125), Expect = 1e-08
 Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 2/97 (2%)

Query: 3   HSNCENVVLPKVSTEL-KGHELEFCPRCDCHFEIRNXXXXXXXXXXXXXXXXXXFGYMGF 61
           H    N+V  +VS  + + H   F   CDC +E RN                   GYM F
Sbjct: 114 HCKPSNIVKDQVSNFVDETHMDAFLANCDCRYESRNTVLLKVVVIFVICVIAVLTGYMVF 173

Query: 62  LLCLDPLINKKKVKF-YQEHSSEEARTLLMQGEDVED 97
           L+CLDP++ KK++   YQ+H+ E    +       +D
Sbjct: 174 LMCLDPMLRKKRLSISYQQHNDEMEDNIFAAAPSTDD 210


>U23510-8|ABC71804.1|  128|Caenorhabditis elegans Hypothetical
          protein R12C12.6b protein.
          Length = 128

 Score = 50.4 bits (115), Expect = 2e-07
 Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 1/74 (1%)

Query: 25 FCPRCDCHFEIRNXXXXXXXXXXXXXXXXXXFGYMGFLLCLDPLINKKKVKF-YQEHSSE 83
          F   CDC +E RN                   GYM FL+CLDP++ KK++   YQ+H+ E
Sbjct: 4  FLANCDCRYESRNTVLLKVVVIFVICVIAVLTGYMVFLMCLDPMLRKKRLSISYQQHNDE 63

Query: 84 EARTLLMQGEDVED 97
              +       +D
Sbjct: 64 MEDNIFAAAPSTDD 77


>U64857-5|AAN84848.1|  143|Caenorhabditis elegans Hypothetical
          protein C37C3.13 protein.
          Length = 143

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 57 GYMGFLLCLDPLINKKKVKFYQEHSSEEARTLLMQG 92
          G  G L+C D  +   KVK Y + +  +   LL +G
Sbjct: 27 GVKGVLMCGDKPLANTKVKLYDDDTGPDLDDLLAEG 62


>AL033514-8|CAA22114.1|  648|Caenorhabditis elegans Hypothetical
           protein Y75B8A.7 protein.
          Length = 648

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 63  LCLDPLINKKKVKFYQEHSSEEARTLLMQGEDVED 97
           L LD   NKK+V+F  +   EE      + ED+ D
Sbjct: 277 LSLDDGKNKKRVRFAMDEEPEEEEVEDEEQEDIND 311


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.323    0.140    0.438 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,081,832
Number of Sequences: 27539
Number of extensions: 54584
Number of successful extensions: 102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96
Number of HSP's gapped (non-prelim): 4
length of query: 97
length of database: 12,573,161
effective HSP length: 70
effective length of query: 27
effective length of database: 10,645,431
effective search space: 287426637
effective search space used: 287426637
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)